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1
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6
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7.5k
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Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome ChIP-Seq
updated 2.8 years ago by • 0 • written 7.1 years ago by ▴ 640
1
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1
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2.7k
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Comment: C: GFF file multiple features for 1 gene region, how to collapse into 1?
7.1 years ago by goodez ▴ 640
1
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1
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3.3k
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Comment: C: How I can pars this file by R or bash?
7.1 years ago by goodez ▴ 640
0
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1
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1.2k
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How/where to obtain a bigwig or bedgraph of unmappable genome regions?
alignment genome
7.1 years ago by goodez ▴ 640
0
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1
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6.6k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
7.1 years ago by goodez ▴ 640
1
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2
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2.1k
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Answer: A: Where to find snRNA annotations?
7.1 years ago by goodez ▴ 640
1
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3
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2.1k
views
Where to find snRNA annotations?
annotation ChIP-Seq
7.1 years ago by goodez ▴ 640
0
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0
replies
4.6k
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Comment: C: question about calling peak by macs2
7.1 years ago by goodez ▴ 640
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0
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1.3k
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Comment: C: D. mel gene table with strand and position data? Investigating strand bias
7.1 years ago by goodez ▴ 640
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0
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1.3k
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Answer: A: D. mel gene table with strand and position data? Investigating strand bias
7.1 years ago by goodez ▴ 640
0
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1
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3.3k
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Comment: C: Gene Name from PDB id
7.1 years ago by goodez ▴ 640
0
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0
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3.3k
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Answer: A: Gene Name from PDB id
7.1 years ago by goodez ▴ 640
0
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1
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4.6k
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Answer: A: question about calling peak by macs2
7.1 years ago by goodez ▴ 640
0
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0
replies
5.3k
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Comment: C: Error: package or namespace load failed for ReactomePA
7.1 years ago by goodez ▴ 640
0
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1
reply
2.2k
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Answer: A: Consensus motif of closely related TFs
7.1 years ago by goodez ▴ 640
0
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1
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4.6k
views
Comment: C: question about calling peak by macs2
7.1 years ago by goodez ▴ 640
1
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2
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4.6k
views
Comment: C: question about calling peak by macs2
7.1 years ago by goodez ▴ 640
0
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0
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3.0k
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Answer: A: RUVSeq with ERCC spike-ins Mix1 and Mix2
7.1 years ago by goodez ▴ 640
0
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1
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17k
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Comment: C: How to use edgeR to compare multiple conditions to reference condtiion
7.3 years ago by goodez ▴ 640
0
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2
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5.1k
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Comment: C: What is a read group?
7.3 years ago by goodez ▴ 640
0
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1
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6.2k
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Comment: C: Quick and easy way to get alignment stats from many SAM/BAM files?
7.3 years ago by goodez ▴ 640
7
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5
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6.2k
views
Quick and easy way to get alignment stats from many SAM/BAM files?
RNA-Seq alignment
7.3 years ago by goodez ▴ 640
1
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0
replies
2.3k
views
Comment: C: Merging individual .bed files?
7.3 years ago by goodez ▴ 640
0
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0
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3.9k
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Comment: C: Difference in BAM coverage between bedtools output and IGV coverage track
7.3 years ago by goodez ▴ 640
0
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0
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1.5k
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Comment: C: Question on BIGWIG tracks from Chip Seq experiments
7.3 years ago by goodez ▴ 640
0
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1
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1.4k
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Comment: C: ChIPseq vs RNAseq results comparison
7.3 years ago by goodez ▴ 640
4
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0
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4.0k
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Answer: A: Meaning of Decimal points in ENST notation
7.4 years ago by goodez ▴ 640
0
votes
0
replies
1.7k
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Answer: A: filter data based on values
7.4 years ago by goodez ▴ 640
1
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0
replies
1.7k
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Comment: C: filter data based on values
7.4 years ago by goodez ▴ 640
0
votes
1
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1.4k
views
Comment: C: How to loop over several samples with QDNAseq
7.4 years ago by goodez ▴ 640
2
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0
replies
1.9k
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Comment: C: python and bidirectional hit
7.4 years ago by goodez ▴ 640
0
votes
0
replies
10k
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Comment: C: Find consensus overlap between many bed files
7.4 years ago by goodez ▴ 640
0
votes
1
reply
10k
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Comment: C: Find consensus overlap between many bed files
7.4 years ago by goodez ▴ 640
0
votes
0
replies
10k
views
Comment: C: Find consensus overlap between many bed files
7.4 years ago by goodez ▴ 640
0
votes
0
replies
10k
views
Comment: C: Find consensus overlap between many bed files
7.4 years ago by goodez ▴ 640
0
votes
0
replies
6.3k
views
Comment: C: Plot multiple bed files using R package Gviz
7.4 years ago by goodez ▴ 640
0
votes
1
reply
2.5k
views
Comment: C: Normalize coverage to spike-in chromatin
7.4 years ago by goodez ▴ 640
0
votes
1
reply
9.1k
views
Comment: C: Empty output from MACS2 when using control
7.4 years ago by goodez ▴ 640
0
votes
0
replies
2.5k
views
Comment: C: Normalize coverage to spike-in chromatin
7.4 years ago by goodez ▴ 640
1
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4
replies
2.5k
views
Normalize coverage to spike-in chromatin
ChIP-Seq Normalization
updated 7.4 years ago by 105k • written 7.4 years ago by ▴ 640
0
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1
reply
5.5k
views
Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
7.4 years ago by goodez ▴ 640
0
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1
reply
5.5k
views
Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
7.4 years ago by goodez ▴ 640
0
votes
1
reply
5.5k
views
Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
7.4 years ago by goodez ▴ 640
0
votes
1
reply
2.6k
views
Comment: C: copy number file format issue
7.4 years ago by goodez ▴ 640
0
votes
1
reply
2.6k
views
Comment: C: copy number file format issue
7.4 years ago by goodez ▴ 640
1
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0
replies
9.4k
views
Answer: A: Python script to remove sequences from a fasta file
7.4 years ago by goodez ▴ 640
0
votes
0
replies
9.4k
views
Comment: C: Python script to remove sequences from a fasta file
7.4 years ago by goodez ▴ 640
0
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0
replies
5.6k
views
Comment: C: Extract uniquely mapped reads from one species
7.4 years ago by goodez ▴ 640
2
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2
replies
5.6k
views
Answer: A: Extract uniquely mapped reads from one species
7.4 years ago by goodez ▴ 640
0
votes
1
reply
5.6k
views
Comment: C: Extract uniquely mapped reads from one species
7.4 years ago by goodez ▴ 640
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