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Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome ChIP-Seq
updated 15 months ago by • 0 • written 5.5 years ago by ▴ 640
1
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1
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2.2k
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Comment: C: GFF file multiple features for 1 gene region, how to collapse into 1?
5.5 years ago by goodez ▴ 640
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1
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2.1k
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Comment: C: How I can pars this file by R or bash?
5.5 years ago by goodez ▴ 640
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1
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939
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How/where to obtain a bigwig or bedgraph of unmappable genome regions?
alignment genome
5.5 years ago by goodez ▴ 640
0
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1
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4.5k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
5.5 years ago by goodez ▴ 640
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2
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1.6k
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Answer: A: Where to find snRNA annotations?
5.6 years ago by goodez ▴ 640
1
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3
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1.6k
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Where to find snRNA annotations?
annotation ChIP-Seq
5.6 years ago by goodez ▴ 640
0
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0
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2.9k
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Comment: C: question about calling peak by macs2
5.6 years ago by goodez ▴ 640
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0
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931
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Comment: C: D. mel gene table with strand and position data? Investigating strand bias
5.6 years ago by goodez ▴ 640
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0
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931
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Answer: A: D. mel gene table with strand and position data? Investigating strand bias
5.6 years ago by goodez ▴ 640
0
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1
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2.5k
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Comment: C: Gene Name from PDB id
5.6 years ago by goodez ▴ 640
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0
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2.5k
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Answer: A: Gene Name from PDB id
5.6 years ago by goodez ▴ 640
0
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1
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2.9k
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Answer: A: question about calling peak by macs2
5.6 years ago by goodez ▴ 640
0
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0
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4.2k
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Comment: C: Error: package or namespace load failed for ReactomePA
5.6 years ago by goodez ▴ 640
0
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1
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1.6k
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Answer: A: Consensus motif of closely related TFs
5.6 years ago by goodez ▴ 640
0
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1
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2.9k
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Comment: C: question about calling peak by macs2
5.6 years ago by goodez ▴ 640
1
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2
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2.9k
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Comment: C: question about calling peak by macs2
5.6 years ago by goodez ▴ 640
0
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0
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2.4k
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Answer: A: RUVSeq with ERCC spike-ins Mix1 and Mix2
5.6 years ago by goodez ▴ 640
0
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1
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16k
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Comment: C: How to use edgeR to compare multiple conditions to reference condtiion
5.7 years ago by goodez ▴ 640
0
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2
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3.2k
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Comment: C: What is a read group?
5.7 years ago by goodez ▴ 640
0
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1
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5.0k
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Comment: C: Quick and easy way to get alignment stats from many SAM/BAM files?
5.8 years ago by goodez ▴ 640
7
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5
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5.0k
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Quick and easy way to get alignment stats from many SAM/BAM files?
RNA-Seq alignment
5.8 years ago by goodez ▴ 640
1
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0
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1.8k
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Comment: C: Merging individual .bed files?
5.8 years ago by goodez ▴ 640
0
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0
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2.9k
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Comment: C: Difference in BAM coverage between bedtools output and IGV coverage track
5.8 years ago by goodez ▴ 640
0
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0
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1.2k
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Comment: C: Question on BIGWIG tracks from Chip Seq experiments
5.8 years ago by goodez ▴ 640
0
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1
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1.0k
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Comment: C: ChIPseq vs RNAseq results comparison
5.8 years ago by goodez ▴ 640
4
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0
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3.4k
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Answer: A: Meaning of Decimal points in ENST notation
5.8 years ago by goodez ▴ 640
0
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0
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1.2k
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Answer: A: filter data based on values
5.8 years ago by goodez ▴ 640
1
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0
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1.2k
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Comment: C: filter data based on values
5.8 years ago by goodez ▴ 640
0
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1
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956
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Comment: C: How to loop over several samples with QDNAseq
5.8 years ago by goodez ▴ 640
2
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0
replies
1.4k
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Comment: C: python and bidirectional hit
5.8 years ago by goodez ▴ 640
0
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0
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6.6k
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Comment: C: Find consensus overlap between many bed files
5.8 years ago by goodez ▴ 640
0
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1
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6.6k
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Comment: C: Find consensus overlap between many bed files
5.8 years ago by goodez ▴ 640
0
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0
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6.6k
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Comment: C: Find consensus overlap between many bed files
5.8 years ago by goodez ▴ 640
0
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0
replies
6.6k
views
Comment: C: Find consensus overlap between many bed files
5.8 years ago by goodez ▴ 640
0
votes
0
replies
5.3k
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Comment: C: Plot multiple bed files using R package Gviz
5.8 years ago by goodez ▴ 640
0
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1
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1.9k
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Comment: C: Normalize coverage to spike-in chromatin
5.8 years ago by goodez ▴ 640
0
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1
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6.9k
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Comment: C: Empty output from MACS2 when using control
5.8 years ago by goodez ▴ 640
0
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0
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1.9k
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Comment: C: Normalize coverage to spike-in chromatin
5.8 years ago by goodez ▴ 640
1
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4
replies
1.9k
views
Normalize coverage to spike-in chromatin
ChIP-Seq Normalization
updated 5.8 years ago by 104k • written 5.9 years ago by ▴ 640
0
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1
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4.1k
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Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
5.8 years ago by goodez ▴ 640
0
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1
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4.1k
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Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
5.8 years ago by goodez ▴ 640
0
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1
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4.1k
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Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
5.8 years ago by goodez ▴ 640
0
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1
reply
1.7k
views
Comment: C: copy number file format issue
5.8 years ago by goodez ▴ 640
0
votes
1
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1.7k
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Comment: C: copy number file format issue
5.8 years ago by goodez ▴ 640
1
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0
replies
7.6k
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Answer: A: Python script to remove sequences from a fasta file
5.8 years ago by goodez ▴ 640
0
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0
replies
7.6k
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Comment: C: Python script to remove sequences from a fasta file
5.8 years ago by goodez ▴ 640
0
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0
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3.9k
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Comment: C: Extract uniquely mapped reads from one species
5.8 years ago by goodez ▴ 640
2
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2
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3.9k
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Answer: A: Extract uniquely mapped reads from one species
5.9 years ago by goodez ▴ 640
0
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1
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3.9k
views
Comment: C: Extract uniquely mapped reads from one species
5.9 years ago by goodez ▴ 640
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