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Answer: Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
3 months ago by Barry Digby ★ 1.3k
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368
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Answer: Answer: How to implement neoantigen sequences using WES data?
6 months ago by Barry Digby ★ 1.3k
3
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1
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837
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Answer: Answer: Unable to save plots in R using jpeg() or png()
6 months ago by Barry Digby ★ 1.3k
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1
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592
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
6 months ago by Barry Digby ★ 1.3k
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1
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841
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Answer: Answer: identify DEGs across all conditions and per specific conditions
7 months ago by Barry Digby ★ 1.3k
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1
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711
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Answer: Answer: obtaining circular RNAs' sequences from circBase
7 months ago by Barry Digby ★ 1.3k
3
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651
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Answer: Answer: Identifying common DEGs among multiple datasets
7 months ago by Barry Digby ★ 1.3k
2
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3.0k
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Answer: Answer: Running python script in slurm using conda environment
7 months ago by Barry Digby ★ 1.3k
3
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1.1k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
7 months ago by Barry Digby ★ 1.3k
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1.4k
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Answer: Answer: How to run prepDE.py3?
13 months ago by Barry Digby ★ 1.3k
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1.6k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
15 months ago by Barry Digby ★ 1.3k
2
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1
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795
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
20 months ago by Barry Digby ★ 1.3k
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666
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Answer: Answer: CIRIexplorer2 annotate
22 months ago by Barry Digby ★ 1.3k
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1
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1.1k
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Answer: Answer: how does annotate circular RNA ?
2.4 years ago by Barry Digby ★ 1.3k
3
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0
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3.6k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
2.4 years ago by Barry Digby ★ 1.3k
3
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1
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960
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Answer: Answer: GEOquery: unable to fetch raw CEL files
2.6 years ago by Barry Digby ★ 1.3k
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3.1k
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Answer: Answer: BUSCO installation and run
2.7 years ago by Barry Digby ★ 1.3k
4
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1
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2.8k
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Answer: A: nextflow set tuple issue
3.1 years ago by Barry Digby ★ 1.3k
2
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1
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1.6k
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Answer: A: How to remove X & Y chromosome genes from RNAseq data
3.3 years ago by Barry Digby ★ 1.3k
3
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2
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1.9k
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Answer: A: TCGA gene and mirna expression value
3.4 years ago by Barry Digby ★ 1.3k
2
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2
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1.3k
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Answer: A: Help interpretating DESeq2 output
3.4 years ago by Barry Digby ★ 1.3k
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0
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5.1k
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Answer: A: GATK Panel Of Normals (PoN)
3.5 years ago by Barry Digby ★ 1.3k
3
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1
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1.3k
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Answer: C: HT-Seq count data coding gene
3.5 years ago by Barry Digby ★ 1.3k
2
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0
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1.3k
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Answer: A: Circlize genomicLabel won't plot outside.
3.5 years ago by Barry Digby ★ 1.3k
2
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0
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4.3k
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Answer: A: How to take input TCGA miRNA data in Limma R package for differential expression
3.5 years ago by Barry Digby ★ 1.3k
5
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1
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3.8k
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Answer: C: How to select differential expressed genes using DeSeq2?
3.5 years ago by Barry Digby ★ 1.3k
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0
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1.9k
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Answer: A: GATK4 best practices: 1500 lines of code ... !?
3.7 years ago by Barry Digby ★ 1.3k
4
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1
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7.0k
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Answer: A: How to prepare .gct file for GSEA software?
3.7 years ago by Barry Digby ★ 1.3k
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0
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1.6k
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Answer: A: calculating fold change
3.7 years ago by Barry Digby ★ 1.3k
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0
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1.3k
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Answer: A: RNA seq data analysis
3.8 years ago by Barry Digby ★ 1.3k
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1
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2.1k
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Answer: A: miRDeep2 problem with reads_collapsed.fa
3.9 years ago by Barry Digby ★ 1.3k
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0
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7.8k
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Answer: A: Nextflow using existing Conda Environments
3.9 years ago by Barry Digby ★ 1.3k
1
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1
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14k
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Answer: A: How to create a GSEA enrichment plot for the phenotypes in R?
3.9 years ago by Barry Digby ★ 1.3k
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0
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1.2k
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Answer: A: miRDeep2 Mapper "Bowtie mapping tool not installed"
4.0 years ago by Barry Digby ★ 1.3k
1
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0
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530
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Answer: A: Predict which genes might cause treatment response or lack of response
4.1 years ago by Barry Digby ★ 1.3k
1
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1
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1.3k
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Answer: A: Where is a good place to find experienced, ongoing, bioinformatics help?
4.1 years ago by Barry Digby ★ 1.3k
0
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0
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2.0k
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Answer: A: Editing source scripts in a container
4.1 years ago by Barry Digby ★ 1.3k
3
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0
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1.5k
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Answer: A: In need of guidance: RNA-seq analysis
4.2 years ago by Barry Digby ★ 1.3k
1
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1
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1.2k
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Answer: A: How to perform iteration task inside a docker image (RNA-seq analysis)
4.2 years ago by Barry Digby ★ 1.3k
1
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1
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9.5k
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Answer: A: How to plot GSEA result?
4.4 years ago by Barry Digby ★ 1.3k
7
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0
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5.3k
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Answer: A: mireap procedure short tutorial
4.6 years ago by Barry Digby ★ 1.3k
4
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2
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5.8k
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Answer: A: Appropriate gene IDs for enrichment analysis (with clusterProfiler)
4.7 years ago by Barry Digby ★ 1.3k
0
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0
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2.8k
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Answer: A: prediction of viral miRNAs by Vmir analyzer...
5.0 years ago by Barry Digby ★ 1.3k
1
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2
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5.6k
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Answer: A: How to convert vcf to MAF ?
5.4 years ago by Barry Digby ★ 1.3k
3
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0
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4.9k
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Answer: A: Tximport > DESeq2 (sample names)
5.4 years ago by Barry Digby ★ 1.3k
2
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1
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2.3k
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Answer: A: Can I get AddOrReplaceReadGroups working for multiple files?
5.5 years ago by Barry Digby ★ 1.3k
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