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900
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Answer: Answer: miRNA alignment and count generation
4 months ago by Barry Digby ★ 1.3k
2
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0
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845
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Comment: Comment: LASSO regression for gene selection and clinical variables
8 months ago by Barry Digby ★ 1.3k
0
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0
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703
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Comment: Comment: Help related to HTSEq usage specific for downstream DEXSeq analysis
20 months ago by Barry Digby ★ 1.3k
2
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0
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2.6k
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Answer: Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
20 months ago by Barry Digby ★ 1.3k
0
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0
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1.1k
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Comment: Comment: Opinion on miRNA pipeline
21 months ago by Barry Digby ★ 1.3k
0
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1
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1.1k
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Comment: Comment: Opinion on miRNA pipeline
21 months ago by Barry Digby ★ 1.3k
0
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0
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758
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Comment: Comment: error uploading gct file to gsea
22 months ago by Barry Digby ★ 1.3k
1
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0
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986
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Answer: Answer: How to implement neoantigen sequences using WES data?
23 months ago by Barry Digby ★ 1.3k
3
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1
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5.5k
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Answer: Answer: Unable to save plots in R using jpeg() or png()
23 months ago by Barry Digby ★ 1.3k
0
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0
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1.2k
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
23 months ago by Barry Digby ★ 1.3k
0
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1
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1.2k
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
23 months ago by Barry Digby ★ 1.3k
0
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0
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1.2k
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Comment: Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 23 months ago by 45k • written 23 months ago by ★ 1.3k
1
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1
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1.7k
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Answer: Answer: identify DEGs across all conditions and per specific conditions
24 months ago by Barry Digby ★ 1.3k
0
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1
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1.7k
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Comment: Comment: obtaining circular RNAs' sequences from circBase
24 months ago by Barry Digby ★ 1.3k
1
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1
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1.7k
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Answer: Answer: obtaining circular RNAs' sequences from circBase
24 months ago by Barry Digby ★ 1.3k
4
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0
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1.4k
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Answer: Answer: Identifying common DEGs among multiple datasets
24 months ago by Barry Digby ★ 1.3k
2
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0
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16k
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Answer: Answer: Running python script in slurm using conda environment
2.0 years ago by Barry Digby ★ 1.3k
3
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0
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2.8k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
2.0 years ago by Barry Digby ★ 1.3k
0
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1
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2.1k
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
2.4 years ago by Barry Digby ★ 1.3k
0
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1
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1.1k
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Comment: Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
2.4 years ago by Barry Digby ★ 1.3k
0
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0
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2.9k
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Answer: Answer: How to run prepDE.py3?
2.5 years ago by Barry Digby ★ 1.3k
0
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0
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2.4k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
2.7 years ago by Barry Digby ★ 1.3k
2
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1
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1.5k
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
3.0 years ago by Barry Digby ★ 1.3k
1
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1
reply
988
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Comment: Comment: circular RNA analysis workflow
3.1 years ago by Barry Digby ★ 1.3k
0
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5
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3.1k
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Missing gene symbols in bustools output
bustools scanpy kallisto single-cell scRNA
updated 3.2 years ago by • 0 • written 5.7 years ago by ★ 1.3k
1
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1
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6.0k
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Comment: Comment: error while testing nextflow with --genome GRCh38
3.2 years ago by Barry Digby ★ 1.3k
1
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0
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1.1k
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Answer: Answer: CIRIexplorer2 annotate
3.3 years ago by Barry Digby ★ 1.3k
0
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1
reply
9.5k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.4 years ago by Barry Digby ★ 1.3k
0
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0
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9.5k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.4 years ago by Barry Digby ★ 1.3k
0
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1
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9.5k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.5 years ago by Barry Digby ★ 1.3k
16
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9
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9.5k
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Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 3.3 years ago by ▴ 70 • written 3.8 years ago by ★ 1.3k
2
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0
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1.7k
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Comment: Comment: how does annotate circular RNA ?
3.8 years ago by Barry Digby ★ 1.3k
1
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1
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1.7k
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Answer: Answer: how does annotate circular RNA ?
3.8 years ago by Barry Digby ★ 1.3k
3
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0
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5.6k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
3.8 years ago by Barry Digby ★ 1.3k
3
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1
reply
1.4k
views
Answer: Answer: GEOquery: unable to fetch raw CEL files
4.0 years ago by Barry Digby ★ 1.3k
0
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0
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5.1k
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Answer: Answer: BUSCO installation and run
4.1 years ago by Barry Digby ★ 1.3k
1
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0
replies
5.3k
views
Comment: Comment: Add NES value to GSEA plot
4.2 years ago by Barry Digby ★ 1.3k
1
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1
reply
3.5k
views
Comment: Comment: TCGA library type information
4.3 years ago by Barry Digby ★ 1.3k
0
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1
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3.5k
views
Comment: Comment: TCGA library type information
4.3 years ago by Barry Digby ★ 1.3k
3
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0
replies
2.6k
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Comment: C: Getting standard 12-column format for a list of genes
4.5 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.2k
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Comment: C: how to annotate Circular RNA gene type?
4.5 years ago by Barry Digby ★ 1.3k
1
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1
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1.2k
views
Comment: C: how to annotate Circular RNA gene type?
4.5 years ago by Barry Digby ★ 1.3k
0
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1
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3.8k
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Comment: C: nextflow set tuple issue
4.5 years ago by Barry Digby ★ 1.3k
4
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1
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3.8k
views
Answer: A: nextflow set tuple issue
4.5 years ago by Barry Digby ★ 1.3k
1
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0
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13k
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Comment: C: How to plot GSEA result?
4.6 years ago by Barry Digby ★ 1.3k
0
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1
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4.1k
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Comment: C: Which adapters to use for trimming?
4.7 years ago by Barry Digby ★ 1.3k
0
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1
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4.1k
views
Comment: C: Which adapters to use for trimming?
4.7 years ago by Barry Digby ★ 1.3k
2
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1
reply
2.6k
views
Answer: A: How to remove X & Y chromosome genes from RNAseq data
4.7 years ago by Barry Digby ★ 1.3k
0
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1
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2.6k
views
Comment: C: How to remove X & Y chromosome genes from RNAseq data
4.7 years ago by Barry Digby ★ 1.3k
1
vote
0
replies
13k
views
Comment: C: How to plot GSEA result?
4.7 years ago by Barry Digby ★ 1.3k
146 results • Page 1 of 3
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