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518
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
27 days ago by Barry Digby ★ 1.1k
0
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1
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287
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Comment: Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
6 weeks ago by Barry Digby ★ 1.1k
0
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0
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421
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Answer: Answer: How to run prepDE.py3?
9 weeks ago by Barry Digby ★ 1.1k
0
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0
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1.2k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
4 months ago by Barry Digby ★ 1.1k
2
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1
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426
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
9 months ago by Barry Digby ★ 1.1k
1
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1
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459
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Comment: Comment: circular RNA analysis workflow
9 months ago by Barry Digby ★ 1.1k
0
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5
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1.8k
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Missing gene symbols in bustools output
bustools scanpy kallisto single-cell scRNA
updated 10 months ago by • 0 • written 3.4 years ago by ★ 1.1k
1
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1
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1.6k
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Comment: Comment: error while testing nextflow with --genome GRCh38
11 months ago by Barry Digby ★ 1.1k
1
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0
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411
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Answer: Answer: CIRIexplorer2 annotate
11 months ago by Barry Digby ★ 1.1k
0
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1
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4.7k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
13 months ago by Barry Digby ★ 1.1k
0
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0
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4.7k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
13 months ago by Barry Digby ★ 1.1k
0
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1
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4.7k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
14 months ago by Barry Digby ★ 1.1k
16
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9
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4.7k
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Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 11 months ago by ▴ 70 • written 18 months ago by ★ 1.1k
2
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0
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776
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Comment: Comment: how does annotate circular RNA ?
18 months ago by Barry Digby ★ 1.1k
1
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1
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776
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Answer: Answer: how does annotate circular RNA ?
18 months ago by Barry Digby ★ 1.1k
3
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0
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2.3k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
18 months ago by Barry Digby ★ 1.1k
3
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1
reply
654
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Answer: Answer: GEOquery: unable to fetch raw CEL files
20 months ago by Barry Digby ★ 1.1k
0
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0
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2.1k
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Answer: Answer: BUSCO installation and run
22 months ago by Barry Digby ★ 1.1k
1
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0
replies
2.2k
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Comment: Comment: Add NES value to GSEA plot
23 months ago by Barry Digby ★ 1.1k
1
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1
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1.5k
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Comment: Comment: TCGA library type information
2.0 years ago by Barry Digby ★ 1.1k
0
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1
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1.5k
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Comment: Comment: TCGA library type information
2.1 years ago by Barry Digby ★ 1.1k
3
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0
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1.2k
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Comment: C: Getting standard 12-column format for a list of genes
2.2 years ago by Barry Digby ★ 1.1k
0
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0
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589
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Comment: C: how to annotate Circular RNA gene type?
2.2 years ago by Barry Digby ★ 1.1k
1
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1
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589
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Comment: C: how to annotate Circular RNA gene type?
2.2 years ago by Barry Digby ★ 1.1k
0
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1
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2.2k
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Comment: C: nextflow set tuple issue
2.2 years ago by Barry Digby ★ 1.1k
4
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1
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2.2k
views
Answer: A: nextflow set tuple issue
2.2 years ago by Barry Digby ★ 1.1k
1
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0
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7.0k
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Comment: C: How to plot GSEA result?
2.3 years ago by Barry Digby ★ 1.1k
0
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1
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2.2k
views
Comment: C: Which adapters to use for trimming?
2.4 years ago by Barry Digby ★ 1.1k
0
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1
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2.2k
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Comment: C: Which adapters to use for trimming?
2.4 years ago by Barry Digby ★ 1.1k
2
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1
reply
1.1k
views
Answer: A: How to remove X & Y chromosome genes from RNAseq data
2.4 years ago by Barry Digby ★ 1.1k
0
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1
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1.1k
views
Comment: C: How to remove X & Y chromosome genes from RNAseq data
2.4 years ago by Barry Digby ★ 1.1k
1
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0
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7.0k
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Comment: C: How to plot GSEA result?
2.4 years ago by Barry Digby ★ 1.1k
0
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0
replies
1.5k
views
Comment: C: TCGA gene and mirna expression value
2.4 years ago by Barry Digby ★ 1.1k
0
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0
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1.3k
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Comment: C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
2.5 years ago by Barry Digby ★ 1.1k
3
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2
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1.5k
views
Answer: A: TCGA gene and mirna expression value
2.5 years ago by Barry Digby ★ 1.1k
2
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2
replies
961
views
Answer: A: Help interpretating DESeq2 output
2.5 years ago by Barry Digby ★ 1.1k
3
votes
2
replies
4.4k
views
Tximport > DESeq2 (sample names)
DESeq2 tximport RNA-Seq
updated 2.5 years ago by • 0 • written 4.5 years ago by ★ 1.1k
0
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0
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4.5k
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Answer: A: GATK Panel Of Normals (PoN)
2.6 years ago by Barry Digby ★ 1.1k
3
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1
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1.0k
views
Answer: C: HT-Seq count data coding gene
2.6 years ago by Barry Digby ★ 1.1k
2
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1
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1.1k
views
Circlize genomicLabel won't plot outside.
Circlize
2.6 years ago by Barry Digby ★ 1.1k
2
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0
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1.1k
views
Answer: A: Circlize genomicLabel won't plot outside.
2.6 years ago by Barry Digby ★ 1.1k
2
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0
replies
3.7k
views
Answer: A: How to take input TCGA miRNA data in Limma R package for differential expression
2.6 years ago by Barry Digby ★ 1.1k
1
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0
replies
2.5k
views
Comment: C: How to select differential expressed genes using DeSeq2?
2.6 years ago by Barry Digby ★ 1.1k
0
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1
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2.5k
views
Comment: C: How to select differential expressed genes using DeSeq2?
2.6 years ago by Barry Digby ★ 1.1k
4
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1
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2.5k
views
Answer: C: How to select differential expressed genes using DeSeq2?
2.6 years ago by Barry Digby ★ 1.1k
0
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0
replies
1.8k
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Comment: C: STAR index file for GRCH37
2.7 years ago by Barry Digby ★ 1.1k
0
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1
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1.0k
views
Comment: C: DESeq2 analysis with high number of samples
2.7 years ago by Barry Digby ★ 1.1k
1
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0
replies
847
views
Comment: C: TCGA- which files to download for analyzing differentially expressed miRNAs
2.7 years ago by Barry Digby ★ 1.1k
1
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1
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847
views
Comment: C: TCGA- which files to download for analyzing differentially expressed miRNAs
2.7 years ago by Barry Digby ★ 1.1k
1
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0
replies
1.6k
views
Answer: A: GATK4 best practices: 1500 lines of code ... !?
2.8 years ago by Barry Digby ★ 1.1k
128 results • Page 1 of 3
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