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2
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0
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428
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Comment: Comment: LASSO regression for gene selection and clinical variables
9 weeks ago by Barry Digby ★ 1.3k
0
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0
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549
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Comment: Comment: Help related to HTSEq usage specific for downstream DEXSeq analysis
14 months ago by Barry Digby ★ 1.3k
2
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0
replies
1.4k
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Answer: Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
14 months ago by Barry Digby ★ 1.3k
0
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0
replies
915
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Comment: Comment: Opinion on miRNA pipeline
15 months ago by Barry Digby ★ 1.3k
0
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1
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915
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Comment: Comment: Opinion on miRNA pipeline
15 months ago by Barry Digby ★ 1.3k
0
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0
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611
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Comment: Comment: error uploading gct file to gsea
16 months ago by Barry Digby ★ 1.3k
1
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0
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671
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Answer: Answer: How to implement neoantigen sequences using WES data?
17 months ago by Barry Digby ★ 1.3k
3
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1
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3.7k
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Answer: Answer: Unable to save plots in R using jpeg() or png()
17 months ago by Barry Digby ★ 1.3k
0
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0
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959
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
17 months ago by Barry Digby ★ 1.3k
0
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1
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959
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
17 months ago by Barry Digby ★ 1.3k
0
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0
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1.0k
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Comment: Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 17 months ago by 45k • written 17 months ago by ★ 1.3k
1
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1
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1.3k
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Answer: Answer: identify DEGs across all conditions and per specific conditions
18 months ago by Barry Digby ★ 1.3k
0
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1
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1.2k
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Comment: Comment: obtaining circular RNAs' sequences from circBase
18 months ago by Barry Digby ★ 1.3k
1
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1
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1.2k
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Answer: Answer: obtaining circular RNAs' sequences from circBase
18 months ago by Barry Digby ★ 1.3k
4
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0
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1.1k
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Answer: Answer: Identifying common DEGs among multiple datasets
18 months ago by Barry Digby ★ 1.3k
2
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0
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11k
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Answer: Answer: Running python script in slurm using conda environment
18 months ago by Barry Digby ★ 1.3k
3
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0
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2.2k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
18 months ago by Barry Digby ★ 1.3k
0
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1
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1.6k
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
22 months ago by Barry Digby ★ 1.3k
0
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1
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901
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Comment: Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
23 months ago by Barry Digby ★ 1.3k
0
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0
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2.3k
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Answer: Answer: How to run prepDE.py3?
24 months ago by Barry Digby ★ 1.3k
0
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0
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2.0k
views
Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
2.2 years ago by Barry Digby ★ 1.3k
2
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1
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1.2k
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
2.6 years ago by Barry Digby ★ 1.3k
1
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1
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837
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Comment: Comment: circular RNA analysis workflow
2.6 years ago by Barry Digby ★ 1.3k
0
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5
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2.7k
views
Missing gene symbols in bustools output
bustools scanpy kallisto single-cell scRNA
updated 2.7 years ago by • 0 • written 5.2 years ago by ★ 1.3k
1
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1
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4.8k
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Comment: Comment: error while testing nextflow with --genome GRCh38
2.7 years ago by Barry Digby ★ 1.3k
1
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0
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882
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Answer: Answer: CIRIexplorer2 annotate
2.8 years ago by Barry Digby ★ 1.3k
0
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1
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8.4k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.9 years ago by Barry Digby ★ 1.3k
0
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0
replies
8.4k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.9 years ago by Barry Digby ★ 1.3k
0
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1
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8.4k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.0 years ago by Barry Digby ★ 1.3k
16
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9
replies
8.4k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 2.8 years ago by ▴ 70 • written 3.3 years ago by ★ 1.3k
2
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0
replies
1.5k
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Comment: Comment: how does annotate circular RNA ?
3.3 years ago by Barry Digby ★ 1.3k
1
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1
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1.5k
views
Answer: Answer: how does annotate circular RNA ?
3.3 years ago by Barry Digby ★ 1.3k
3
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0
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4.8k
views
Answer: Answer: need some help on how to use DESeq2 for TCGA data
3.3 years ago by Barry Digby ★ 1.3k
3
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1
reply
1.2k
views
Answer: Answer: GEOquery: unable to fetch raw CEL files
3.5 years ago by Barry Digby ★ 1.3k
0
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0
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4.1k
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Answer: Answer: BUSCO installation and run
3.6 years ago by Barry Digby ★ 1.3k
1
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0
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4.5k
views
Comment: Comment: Add NES value to GSEA plot
3.8 years ago by Barry Digby ★ 1.3k
1
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1
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3.0k
views
Comment: Comment: TCGA library type information
3.8 years ago by Barry Digby ★ 1.3k
0
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1
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3.0k
views
Comment: Comment: TCGA library type information
3.8 years ago by Barry Digby ★ 1.3k
3
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0
replies
2.2k
views
Comment: C: Getting standard 12-column format for a list of genes
4.0 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.0k
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Comment: C: how to annotate Circular RNA gene type?
4.0 years ago by Barry Digby ★ 1.3k
1
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1
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1.0k
views
Comment: C: how to annotate Circular RNA gene type?
4.0 years ago by Barry Digby ★ 1.3k
0
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1
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3.5k
views
Comment: C: nextflow set tuple issue
4.0 years ago by Barry Digby ★ 1.3k
4
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1
reply
3.5k
views
Answer: A: nextflow set tuple issue
4.0 years ago by Barry Digby ★ 1.3k
1
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0
replies
12k
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Comment: C: How to plot GSEA result?
4.1 years ago by Barry Digby ★ 1.3k
0
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1
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3.6k
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Comment: C: Which adapters to use for trimming?
4.2 years ago by Barry Digby ★ 1.3k
0
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1
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3.6k
views
Comment: C: Which adapters to use for trimming?
4.2 years ago by Barry Digby ★ 1.3k
2
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1
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2.2k
views
Answer: A: How to remove X & Y chromosome genes from RNAseq data
4.2 years ago by Barry Digby ★ 1.3k
0
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1
reply
2.2k
views
Comment: C: How to remove X & Y chromosome genes from RNAseq data
4.2 years ago by Barry Digby ★ 1.3k
1
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0
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12k
views
Comment: C: How to plot GSEA result?
4.2 years ago by Barry Digby ★ 1.3k
0
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0
replies
2.4k
views
Comment: C: TCGA gene and mirna expression value
4.2 years ago by Barry Digby ★ 1.3k
145 results • Page 1 of 3
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