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2
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1
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2.6k
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Answer: A: How to get DEPTH, as well as variant calling of transcriptome data
10.4 years ago by Ashutosh Pandey 12k
0
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1
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3.0k
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Comment: C: sequence submit to ncbi
10.4 years ago by Ashutosh Pandey 12k
3
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1
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8.3k
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Answer: Answer: Find mates between all alignments in a SAM file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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0
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4.5k
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Comment: Comment: BQSR using GATK without dbsnp
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
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3.8k
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Comment: Comment: SNP-masking before short-read alignment to human genome
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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3.8k
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Comment: C: SNP-masking before short-read alignment to human genome
10.4 years ago by Ashutosh Pandey 12k
0
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0
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3.3k
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Comment: C: Zero Counts for many genes in 1 replicate, why?
10.4 years ago by Ashutosh Pandey 12k
0
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1
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4.7k
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Comment: C: Solid / Colorspace with bowtie : ERRO -> Extra parameter(s) specified
10.4 years ago by Ashutosh Pandey 12k
4
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1
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4.5k
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Answer: Answer: Question about Details in Picard MarkDuplicates
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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4.0k
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Comment: Comment: Why Samtools cannot call all the SNPs from bam files?
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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0
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5.3k
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Comment: C: GATK IndelRealigner issue "TOO MANY READS"
10.4 years ago by Ashutosh Pandey 12k
0
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0
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8.0k
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Comment: Comment: Converting vcf to fasta format
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
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3.1k
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Comment: Comment: Help merging VCF files divided by chromosome
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
3
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0
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5.3k
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Answer: Answer: mm9 gene names to mm10
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
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6.7k
views
Comment: Comment: error in samfile header
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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3
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6.7k
views
Comment: Comment: error in samfile header
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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6.7k
views
Comment: Comment: error in samfile header
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
reply
6.7k
views
Comment: Comment: error in samfile header
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
reply
12k
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Comment: Comment: How To Extract Spliced Rnaseq Reads
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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6.7k
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Comment: Comment: error in samfile header
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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0
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4.6k
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Comment: C: Count number of mapped raw reads for each transcript in SAM file
10.4 years ago by Ashutosh Pandey 12k
0
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0
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4.6k
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Comment: Comment: Count number of mapped raw reads for each transcript in SAM file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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0
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4.6k
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Comment: Comment: Count number of mapped raw reads for each transcript in SAM file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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0
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4.6k
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Comment: Comment: Count number of mapped raw reads for each transcript in SAM file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
reply
3.4k
views
Comment: C: ANNOVAR ability to report reference and mutant codon
10.4 years ago by Ashutosh Pandey 12k
0
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1
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3.4k
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Comment: Comment: ANNOVAR ability to report reference and mutant codon
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
reply
3.4k
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Comment: Comment: ANNOVAR ability to report reference and mutant codon
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
2
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0
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1.9k
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Comment: Comment: Stop Codons Human Genome
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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0
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5.0k
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Comment: Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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0
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5.0k
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Comment: Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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5.0k
views
Comment: Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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0
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5.0k
views
Comment: C: Identify genes in a tophat aligned bam/sam file
10.4 years ago by Ashutosh Pandey 12k
0
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1
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5.0k
views
Comment: Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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8.9k
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Answer: Answer: Modifying fasta file based on vcf information
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
0
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1
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2.7k
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Comment: C: remove low number of reads from BAM file
10.4 years ago by Ashutosh Pandey 12k
1
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0
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14k
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Comment: Comment: Split Read in Samtools
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
5
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2
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14k
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Answer: Answer: Split Read in Samtools
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
reply
14k
views
Comment: Comment: Split Read in Samtools
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
reply
29k
views
Comment: Comment: How to determine reference genome that was used for alignment given BAM with obs
updated 2.9 years ago by 45k • written 10.4 years ago by 12k
1
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1
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7.0k
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Comment: C: I made a DNA/gene/bioinformatics-y workshop for 11-16 year olds which people may
10.5 years ago by Ashutosh Pandey 12k
3
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1
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30k
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Comment: Comment: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 2.9 years ago by 45k • written 10.5 years ago by 12k
0
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0
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5.5k
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Comment: C: RNA-seq batch effect due to sequencing platform
10.5 years ago by Ashutosh Pandey 12k
8
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5
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5.5k
views
RNA-seq batch effect due to sequencing platform
batch-effect RNA-Seq
updated 3.1 years ago by 45k • written 10.5 years ago by 12k
0
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0
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5.5k
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Comment: C: RNA-seq batch effect due to sequencing platform
10.5 years ago by Ashutosh Pandey 12k
0
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1
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9.5k
views
Comment: Comment: how to find SNP positions (for non-bioinformaticians)
updated 2.9 years ago by 45k • written 10.5 years ago by 12k
0
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0
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17k
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Comment: Comment: Statistical Measure Of Biological Significance For Overlapping Genomic Regions
updated 2.9 years ago by 45k • written 10.5 years ago by 12k
0
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1
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17k
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Comment: Comment: Statistical Measure Of Biological Significance For Overlapping Genomic Regions
updated 2.9 years ago by 45k • written 10.5 years ago by 12k
0
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0
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2.9k
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Comment: Comment: bowtie reporting reads that did not align
updated 2.9 years ago by 45k • written 10.5 years ago by 12k
1
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3
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15k
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Comment: C: How to use Bed file to extract sequence from FASTA file?
10.5 years ago by Ashutosh Pandey 12k
0
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0
replies
3.2k
views
Comment: C: Bed file with the snoRNA coordinates
10.5 years ago by Ashutosh Pandey 12k
1,162 results • Page 5 of 24
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