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answers
comments
2
votes
1
reply
2.6k
views
Answer:
A: How to get DEPTH, as well as variant calling of transcriptome data
10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
3.0k
views
Comment:
C: sequence submit to ncbi
10.4 years ago by
Ashutosh Pandey
12k
3
votes
1
reply
8.3k
views
Answer:
Answer: Find mates between all alignments in a SAM file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
0
replies
4.5k
views
Comment:
Comment: BQSR using GATK without dbsnp
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
3.8k
views
Comment:
Comment: SNP-masking before short-read alignment to human genome
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
3.8k
views
Comment:
C: SNP-masking before short-read alignment to human genome
10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
3.3k
views
Comment:
C: Zero Counts for many genes in 1 replicate, why?
10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
4.7k
views
Comment:
C: Solid / Colorspace with bowtie : ERRO -> Extra parameter(s) specified
10.4 years ago by
Ashutosh Pandey
12k
4
votes
1
reply
4.5k
views
Answer:
Answer: Question about Details in Picard MarkDuplicates
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
4.0k
views
Comment:
Comment: Why Samtools cannot call all the SNPs from bam files?
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
0
replies
5.3k
views
Comment:
C: GATK IndelRealigner issue "TOO MANY READS"
10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
8.0k
views
Comment:
Comment: Converting vcf to fasta format
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
3.1k
views
Comment:
Comment: Help merging VCF files divided by chromosome
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
3
votes
0
replies
5.3k
views
Answer:
Answer: mm9 gene names to mm10
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
6.7k
views
Comment:
Comment: error in samfile header
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
3
replies
6.7k
views
Comment:
Comment: error in samfile header
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
6.7k
views
Comment:
Comment: error in samfile header
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
6.7k
views
Comment:
Comment: error in samfile header
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
12k
views
Comment:
Comment: How To Extract Spliced Rnaseq Reads
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
6.7k
views
Comment:
Comment: error in samfile header
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
4.6k
views
Comment:
C: Count number of mapped raw reads for each transcript in SAM file
10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
4.6k
views
Comment:
Comment: Count number of mapped raw reads for each transcript in SAM file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
4.6k
views
Comment:
Comment: Count number of mapped raw reads for each transcript in SAM file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
4.6k
views
Comment:
Comment: Count number of mapped raw reads for each transcript in SAM file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
3.4k
views
Comment:
C: ANNOVAR ability to report reference and mutant codon
10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
3.4k
views
Comment:
Comment: ANNOVAR ability to report reference and mutant codon
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
3.4k
views
Comment:
Comment: ANNOVAR ability to report reference and mutant codon
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
2
votes
0
replies
1.9k
views
Comment:
Comment: Stop Codons Human Genome
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
5.0k
views
Comment:
Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
5.0k
views
Comment:
Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
5.0k
views
Comment:
Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
5.0k
views
Comment:
C: Identify genes in a tophat aligned bam/sam file
10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
5.0k
views
Comment:
Comment: Identify genes in a tophat aligned bam/sam file
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
8.9k
views
Answer:
Answer: Modifying fasta file based on vcf information
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
2.7k
views
Comment:
C: remove low number of reads from BAM file
10.4 years ago by
Ashutosh Pandey
12k
1
vote
0
replies
14k
views
Comment:
Comment: Split Read in Samtools
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
5
votes
2
replies
14k
views
Answer:
Answer: Split Read in Samtools
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
14k
views
Comment:
Comment: Split Read in Samtools
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
29k
views
Comment:
Comment: How to determine reference genome that was used for alignment given BAM with obs
updated 2.9 years ago by
Ram
45k • written 10.4 years ago by
Ashutosh Pandey
12k
1
vote
1
reply
7.0k
views
Comment:
C: I made a DNA/gene/bioinformatics-y workshop for 11-16 year olds which people may
10.5 years ago by
Ashutosh Pandey
12k
3
votes
1
reply
30k
views
Comment:
Comment: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 2.9 years ago by
Ram
45k • written 10.5 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
5.5k
views
Comment:
C: RNA-seq batch effect due to sequencing platform
10.5 years ago by
Ashutosh Pandey
12k
8
votes
5
replies
5.5k
views
RNA-seq batch effect due to sequencing platform
batch-effect
RNA-Seq
updated 3.1 years ago by
Ram
45k • written 10.5 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
5.5k
views
Comment:
C: RNA-seq batch effect due to sequencing platform
10.5 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
9.5k
views
Comment:
Comment: how to find SNP positions (for non-bioinformaticians)
updated 2.9 years ago by
Ram
45k • written 10.5 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
17k
views
Comment:
Comment: Statistical Measure Of Biological Significance For Overlapping Genomic Regions
updated 2.9 years ago by
Ram
45k • written 10.5 years ago by
Ashutosh Pandey
12k
0
votes
1
reply
17k
views
Comment:
Comment: Statistical Measure Of Biological Significance For Overlapping Genomic Regions
updated 2.9 years ago by
Ram
45k • written 10.5 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
2.9k
views
Comment:
Comment: bowtie reporting reads that did not align
updated 2.9 years ago by
Ram
45k • written 10.5 years ago by
Ashutosh Pandey
12k
1
vote
3
replies
15k
views
Comment:
C: How to use Bed file to extract sequence from FASTA file?
10.5 years ago by
Ashutosh Pandey
12k
0
votes
0
replies
3.2k
views
Comment:
C: Bed file with the snoRNA coordinates
10.5 years ago by
Ashutosh Pandey
12k
1,162 results • Page
5 of 24
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