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5.2k
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Comment: Comment: What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguou
updated 19 months ago by 43k • written 8.7 years ago by 12k
2
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2
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2.9k
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Comment: Comment: Discrepency between number of reads tophat
updated 19 months ago by 43k • written 8.7 years ago by 12k
4
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0
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3.9k
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Comment: Comment: Sample clustering in RNASeq
updated 19 months ago by 43k • written 8.7 years ago by 12k
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0
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4.5k
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Comment: Comment: paired end quality filtering
updated 19 months ago by 43k • written 8.7 years ago by 12k
3
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0
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1.6k
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Answer: Answer: How to include each steps in the bam header
updated 19 months ago by 43k • written 8.7 years ago by 12k
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0
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18k
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Comment: Comment: From A List Of Gene Symbols To A Bed File With Tss Position
updated 19 months ago by 43k • written 8.8 years ago by 12k
1
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0
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3.4k
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Comment: Comment: Whole Genome Sequencing (WGS) Alignment Quality check softwares/tools
updated 19 months ago by 43k • written 8.8 years ago by 12k
1
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1
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4.8k
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Comment: C: Trimmomatics parameters for WGS data quality improvement
8.8 years ago by Ashutosh Pandey 12k
1
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0
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17k
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Comment: C: Using Samtools to convert bam to sam file
8.8 years ago by Ashutosh Pandey 12k
0
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0
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2.1k
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Comment: C: mapping quality for sanger reads
8.8 years ago by Ashutosh Pandey 12k
0
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1
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2.1k
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Answer: Answer: mapping quality for sanger reads
updated 19 months ago by 43k • written 8.8 years ago by 12k
1
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0
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4.8k
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Comment: C: Trimmomatics parameters for WGS data quality improvement
8.8 years ago by Ashutosh Pandey 12k
0
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0
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4.7k
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Comment: C: Where can I download exonerate?
8.8 years ago by Ashutosh Pandey 12k
1
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1
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4.7k
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Comment: Comment: Where can I download exonerate?
updated 19 months ago by 43k • written 8.8 years ago by 12k
1
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0
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4.0k
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Comment: C: Error when trying to fix the contigs order in the reference and vcf for FastaAlt
8.8 years ago by Ashutosh Pandey 12k
1
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0
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4.0k
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Comment: C: Error when trying to fix the contigs order in the reference and vcf for FastaAlt
8.8 years ago by Ashutosh Pandey 12k
1
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1
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6.0k
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Comment: Comment: Mouse strains and Reference genome choice
updated 19 months ago by 43k • written 8.8 years ago by 12k
4
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1
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6.0k
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Answer: Answer: Mouse strains and Reference genome choice
updated 19 months ago by 43k • written 8.8 years ago by 12k
0
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1
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11k
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Comment: C: SAM flag and NH tag
8.8 years ago by Ashutosh Pandey 12k
0
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1
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16k
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Comment: Comment: TRIMMOMATRIC Nextera trimming
updated 19 months ago by 43k • written 8.8 years ago by 12k
0
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1
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1.4k
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Comment: Comment: Non-synonomous mutations fall on CDS and (Intron/UTR) due to alternative transcr
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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1
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3.5k
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Comment: Comment: Unusual samtools mpileup output?
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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0
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2.2k
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Comment: Comment: Tophat mapping less reads (and less properly paired) when more real -r is specif
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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1
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6.1k
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Comment: Comment: STAR crashing due to "FATAL ERROR: Read1 and Read2 are not consistent"
updated 18 months ago by 43k • written 8.8 years ago by 12k
3
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1
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12k
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Answer: Answer: samtools tview symbols
8.8 years ago by Ashutosh Pandey 12k
1
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0
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2.5k
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Comment: Comment: Sam Reference sequence length does not match with the actual fasta sequence inpu
updated 18 months ago by 43k • written 8.8 years ago by 12k
1
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0
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2.5k
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Comment: Comment: Sam Reference sequence length does not match with the actual fasta sequence inpu
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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1
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2.5k
views
Comment: Comment: Sam Reference sequence length does not match with the actual fasta sequence inpu
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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1
reply
16k
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Comment: Comment: Extract reads within given region, and their mates
updated 18 months ago by 43k • written 8.8 years ago by 12k
1
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1
reply
2.4k
views
Answer: Answer: Remove/Identify pseudogenes from a list of Entrez IDs programatically
updated 18 months ago by 43k • written 8.8 years ago by 12k
6
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1
reply
9.9k
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Answer: Answer: How to remove a chr from a bam file?
updated 18 months ago by 43k • written 8.8 years ago by 12k
2
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1
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3.8k
views
Answer: Answer: Genotyping from RNA-Seq: how to recalibrate mapping quality scores in BAM file?
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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0
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1.5k
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Comment: Comment: Generating reference from exome sequence data(bam) to map RNA seq(fastq) from th
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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0
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4.0k
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Answer: Answer: Recommended biology/genomics book for computer scientist students
updated 18 months ago by 43k • written 8.8 years ago by 12k
1
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0
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27k
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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
8.8 years ago by Ashutosh Pandey 12k
0
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0
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2.9k
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Comment: Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 18 months ago by 43k • written 8.8 years ago by 12k
2
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2
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2.9k
views
Answer: Answer: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 18 months ago by 43k • written 8.8 years ago by 12k
0
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0
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2.8k
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Comment: Comment: How to visualize a network like in the provided example?
updated 17 months ago by 43k • written 8.9 years ago by 12k
1
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0
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2.1k
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Comment: C: how can I retrieve FASTA sequence using ID in another text file?
8.9 years ago by Ashutosh Pandey 12k
1
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1
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17k
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Answer: Answer: Small SAM Examples
updated 17 months ago by 43k • written 8.9 years ago by 12k
4
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1
reply
6.5k
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Comment: Comment: Substitution error rate and indel error rate from BAM file
updated 17 months ago by 43k • written 8.9 years ago by 12k
2
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0
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19k
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Comment: Comment: Ti Tv ratio and their usefulness in exome sequencing
updated 17 months ago by 43k • written 8.9 years ago by 12k
0
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0
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2.0k
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Comment: Comment: How to get DEPTH, as well as variant calling of transcriptome data
updated 17 months ago by 43k • written 8.9 years ago by 12k
5
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0
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9.5k
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Answer: Answer: Parsing a SAM file efficiently
updated 17 months ago by 43k • written 8.9 years ago by 12k
0
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0
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3.4k
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Comment: Comment: Biostar under spam attack - restrictions added to post content and title
updated 17 months ago by 43k • written 8.9 years ago by 12k
3
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0
replies
3.4k
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Comment: C: We have added another layer of spam defense - email address verification is now
8.9 years ago by Ashutosh Pandey 12k
1
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0
replies
4.9k
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Comment: Comment: Problems with STAR mapping output
updated 17 months ago by 43k • written 8.9 years ago by 12k
0
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1
reply
5.2k
views
Comment: Comment: How do I calculate the total read depth and allele frequency using just the targ
updated 17 months ago by 43k • written 8.9 years ago by 12k
0
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1
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5.2k
views
Comment: Comment: How do I calculate the total read depth and allele frequency using just the targ
updated 17 months ago by 43k • written 8.9 years ago by 12k
2
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1
reply
2.0k
views
Answer: A: How to get DEPTH, as well as variant calling of transcriptome data
8.9 years ago by Ashutosh Pandey 12k
1,161 results • Page 4 of 24
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