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Comment: Comment: Why use Hi-C and/or Bionano for scaffolding when Nanopore sequencing exists?
8 months ago by alex.zaccaron ▴ 480
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464
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Comment: Comment: Multiple Synteny Plot using MCScanX.
8 months ago by alex.zaccaron ▴ 480
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Comment: Comment: Genome Assembly Verification, Chimeric contigs
8 months ago by alex.zaccaron ▴ 480
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1.5k
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Comment: Comment: Genome Assembly Verification, Chimeric contigs
8 months ago by alex.zaccaron ▴ 480
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1.5k
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Comment: Comment: Genome Assembly Verification, Chimeric contigs
8 months ago by alex.zaccaron ▴ 480
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642
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Answer: Answer: How to filter annotated genes overlapping with TE/repeat element?
9 months ago by alex.zaccaron ▴ 480
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1.4k
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Answer: Answer: IGV and display of amino acid translations
10 months ago by alex.zaccaron ▴ 480
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690
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Answer: Answer: How/where can I get fungal mitogenome data for analysis?
14 months ago by alex.zaccaron ▴ 480
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1
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978
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Answer: Answer: How to add exon annotations to genome annotation
19 months ago by alex.zaccaron ▴ 480
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710
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Comment: Comment: error in determining minimum contigs in Velvet
20 months ago by alex.zaccaron ▴ 480
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1.4k
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Answer: Answer: Why is my genome assembly not aligning well?
22 months ago by alex.zaccaron ▴ 480
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2
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4.8k
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Answer: Answer: Short Read Data Genome Assembly
22 months ago by alex.zaccaron ▴ 480
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1.4k
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Comment: Comment: CAZy database has multiple family sequence...
22 months ago by alex.zaccaron ▴ 480
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1
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805
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Comment: Comment: Specific databases for NRPS and RiPP annotation
3.3 years ago by alex.zaccaron ▴ 480
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1
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3.2k
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Answer: Answer: bedtools intersect error: Invalid record in file
3.5 years ago by alex.zaccaron ▴ 480
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1.8k
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Comment: Comment: Question for Splice variants and Alternative splicing
3.7 years ago by alex.zaccaron ▴ 480
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5.3k
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Answer: Answer: conda error
3.8 years ago by alex.zaccaron ▴ 480
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1
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1.6k
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Answer: Answer: How to pipe awk of bed file into samtools to extract fasta sequences?
3.8 years ago by alex.zaccaron ▴ 480
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1
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1.3k
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Comment: Comment: Sum values in a row and compare the results to a value with awk or sed
3.8 years ago by alex.zaccaron ▴ 480
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1
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2.0k
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Comment: Comment: Seeking simple HiC mapping and visualization tutorial for small genome
3.9 years ago by alex.zaccaron ▴ 480
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1
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2.0k
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Answer: Answer: bash script
3.9 years ago by alex.zaccaron ▴ 480
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1
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1.5k
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Comment: Comment: Exonerate - issues when running it
4.0 years ago by alex.zaccaron ▴ 480
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725
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Comment: Comment: Checking for gene expression in transcriptome - 1 sample RNASeq
4.0 years ago by alex.zaccaron ▴ 480
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1.9k
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Comment: C: Interpreting first round of maker
4.3 years ago by alex.zaccaron ▴ 480
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2.2k
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Comment: C: Convert .sqn file to .gbk
4.4 years ago by alex.zaccaron ▴ 480
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1.7k
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Comment: C: How to check for completeness of a mitochondrial or chloroplast genome?
4.4 years ago by alex.zaccaron ▴ 480
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4.7k
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Comment: C: mummer dot plot
4.4 years ago by alex.zaccaron ▴ 480
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1
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4.7k
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Comment: C: mummer dot plot
4.4 years ago by alex.zaccaron ▴ 480
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1.4k
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Comment: C: Pac bio assembler
4.5 years ago by alex.zaccaron ▴ 480
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1
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1.2k
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Answer: C: Analysis of host-parasite mixed transcriptome
5.1 years ago by alex.zaccaron ▴ 480
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1.8k
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Comment: C: Why the Trimmomatic does not remove some adapters? How do I add a new sequence t
5.1 years ago by alex.zaccaron ▴ 480
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1.5k
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Comment: C: Error downloading streams from SRA-ncbi when running fastq-dump
5.1 years ago by alex.zaccaron ▴ 480
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1
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3.2k
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Comment: C: Correct gtf file format (AGAT toolkit)
5.1 years ago by alex.zaccaron ▴ 480
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5.0k
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Comment: C: Too many unmapped reads - STAR alignment
5.1 years ago by alex.zaccaron ▴ 480
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1
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2.9k
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Comment: C: Gene prediction programs predicting different genes
5.2 years ago by alex.zaccaron ▴ 480
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1
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2.9k
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Answer: C: Gene prediction programs predicting different genes
5.2 years ago by alex.zaccaron ▴ 480
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2.5k
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Answer: A: TransDecoder in Linux
5.2 years ago by alex.zaccaron ▴ 480
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1.6k
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Comment: C: How can I fix frameshift errors in assembled genome?
5.3 years ago by alex.zaccaron ▴ 480
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1.2k
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Comment: C: Contig longer than mitochondrial sequence. Explanation ?
5.4 years ago by alex.zaccaron ▴ 480
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2
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2.7k
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Comment: C: Extract N amino acids from fasta file
5.6 years ago by alex.zaccaron ▴ 480
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2.7k
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Comment: C: Extract N amino acids from fasta file
5.6 years ago by alex.zaccaron ▴ 480
2
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2.3k
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Comment: C: Why map reads back to assembly?
5.7 years ago by alex.zaccaron ▴ 480
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0
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2.6k
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Comment: C: Polish PacBio assembly with Hi-C reads
5.7 years ago by alex.zaccaron ▴ 480
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1.4k
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Comment: C: How to minimize chimeric transcripts assembled with StringTie
5.7 years ago by alex.zaccaron ▴ 480
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1
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1.4k
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How to minimize chimeric transcripts assembled with StringTie
stringtie rna-seq transcriptome
5.7 years ago by alex.zaccaron ▴ 480
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1
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4.1k
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Comment: C: Assembly statistics: abyss & bbmap
5.8 years ago by alex.zaccaron ▴ 480
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1
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4.1k
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Comment: C: Assembly statistics: abyss & bbmap
5.8 years ago by alex.zaccaron ▴ 480
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2
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5.9k
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Comment: C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
5.8 years ago by alex.zaccaron ▴ 480
4
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3.3k
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Answer: C: Filtering BED file for interval length
5.8 years ago by alex.zaccaron ▴ 480
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0
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4.7k
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Comment: C: mummer dot plot
5.9 years ago by alex.zaccaron ▴ 480
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