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28
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4
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16k
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Tool: Plotting GSEA output in R
RNA-Seq javaGSEA GSEA
updated 19 months ago by 44k • written 8.4 years ago by ▴ 850
0
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0
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5.1k
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Comment: C: Bam header editing
5.9 years ago by thomaskuilman ▴ 850
2
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1
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3.4k
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Answer: A: RNA-seq data from human tumors in mice (PDTX)
6.3 years ago by thomaskuilman ▴ 850
1
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0
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1.9k
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Comment: C: Entrez Direct to retrieve Protein and Coding sequences from NCBI accesion
6.3 years ago by thomaskuilman ▴ 850
2
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0
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1.6k
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Answer: A: What's more clear, loops or functions?
6.3 years ago by thomaskuilman ▴ 850
4
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1
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3.9k
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Answer: A: how to deal with sra files which can generate three fastq files?
6.3 years ago by thomaskuilman ▴ 850
0
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1
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3.6k
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Comment: C: Download STRING database with Protein name
6.3 years ago by thomaskuilman ▴ 850
2
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1
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3.6k
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Answer: A: Download STRING database with Protein name
6.3 years ago by thomaskuilman ▴ 850
0
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0
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1.2k
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Answer: A: How to calculate rooted bifurcating tree shapes
6.3 years ago by thomaskuilman ▴ 850
2
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1
reply
1.8k
views
Answer: A: Method to get all possible combinations of genotypes for a group of SNPs
6.3 years ago by thomaskuilman ▴ 850
1
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0
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1.3k
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Answer: A: Find all fragments of n length in a larger sequence
6.3 years ago by thomaskuilman ▴ 850
4
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1
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1.3k
views
Answer: A: Split columns keep the first coordinate from start and end
6.3 years ago by thomaskuilman ▴ 850
0
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0
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2.1k
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Answer: A: Gene expression and drug response large dataset
6.3 years ago by thomaskuilman ▴ 850
1
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0
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4.6k
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Comment: C: unsuccessful split of bam file by samtools and bamtools
6.3 years ago by thomaskuilman ▴ 850
3
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1
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4.6k
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Answer: A: unsuccessful split of bam file by samtools and bamtools
6.3 years ago by thomaskuilman ▴ 850
0
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0
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8.2k
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Comment: C: Gene set enrichment analysis with edgeR output
6.3 years ago by thomaskuilman ▴ 850
0
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2
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8.2k
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Comment: C: Gene set enrichment analysis with edgeR output
6.3 years ago by thomaskuilman ▴ 850
0
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1
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8.2k
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Comment: C: Gene set enrichment analysis with edgeR output
6.3 years ago by thomaskuilman ▴ 850
0
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0
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1.1k
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Answer: A: Discrepancy in Copy Number Alteration between different cancer stages
6.3 years ago by thomaskuilman ▴ 850
2
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1
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8.2k
views
Answer: A: Gene set enrichment analysis with edgeR output
6.3 years ago by thomaskuilman ▴ 850
2
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0
replies
2.8k
views
Answer: A: Get indices from GenomicRanges reduce function
6.3 years ago by thomaskuilman ▴ 850
1
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1
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2.8k
views
Comment: C: Subsetting large list of SNPs with R
6.3 years ago by thomaskuilman ▴ 850
6
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0
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6.8k
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Answer: A: How to derive overall survival and progression free survival from TCGA clinical
6.3 years ago by thomaskuilman ▴ 850
0
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0
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16k
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Comment: C: Plotting GSEA output in R
6.3 years ago by thomaskuilman ▴ 850
1
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0
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33k
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Answer: A: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
6.5 years ago by thomaskuilman ▴ 850
0
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1
reply
16k
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Comment: C: Plotting GSEA output in R
6.6 years ago by thomaskuilman ▴ 850
4
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1
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2.7k
views
Answer: A: Clinical Data of GBM
7.6 years ago by thomaskuilman ▴ 850
0
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0
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33k
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Comment: C: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
8.3 years ago by thomaskuilman ▴ 850
0
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0
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2.0k
views
Answer: A: GDC_Gene expression quantification values for matched tumor normal
8.3 years ago by thomaskuilman ▴ 850
2
votes
1
reply
13k
views
Answer: A: Gsea Plot
8.4 years ago by thomaskuilman ▴ 850
2
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0
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8.7k
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Answer: A: How To Find Sample Information From Srr Labels In Geo?
8.8 years ago by thomaskuilman ▴ 850
0
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0
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4.2k
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Comment: C: How to extract fastq files from SRA data that contains both paired and unpaired
8.8 years ago by thomaskuilman ▴ 850
7
votes
2
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4.2k
views
Tutorial: How to extract fastq files from SRA data that contains both paired and unpaired reads
fastq-dump sra
updated 21 months ago by 44k • written 8.8 years ago by ▴ 850
5
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2
replies
7.3k
views
Answer: A: TCGA clinical data: stage of tumor at time biopsy was taken
8.9 years ago by thomaskuilman ▴ 850
0
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0
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7.3k
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Comment: C: TCGA clinical data: stage of tumor at time biopsy was taken
8.9 years ago by thomaskuilman ▴ 850
0
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0
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7.3k
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Comment: C: TCGA clinical data: stage of tumor at time biopsy was taken
8.9 years ago by thomaskuilman ▴ 850
10
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10
replies
7.3k
views
6 follow
TCGA clinical data: stage of tumor at time biopsy was taken
TCGA clinical data staging survival Kaplan–Meier
8.9 years ago by thomaskuilman ▴ 850
0
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0
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7.3k
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Comment: C: TCGA clinical data: stage of tumor at time biopsy was taken
8.9 years ago by thomaskuilman ▴ 850
0
votes
1
reply
56k
views
Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 3.4 years ago by 44k • written 9.6 years ago by ▴ 850
0
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0
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5.0k
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Comment: C: Revolution (?) in CNA detection using exome/targeted sequencing
9.8 years ago by thomaskuilman ▴ 850
40 results • Page 1 of 1
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