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Answer: Answer: cloupe to 10x format
5 weeks ago by fracarb8 ★ 1.6k
2
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1
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451
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Answer: Answer: change order of violin plots in ggplot2
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 1.6k
1
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1
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680
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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
7 weeks ago by fracarb8 ★ 1.6k
0
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0
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539
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Answer: Answer: ArchR Doublet Inference to Signac
7 weeks ago by fracarb8 ★ 1.6k
3
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0
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277
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Answer: Answer: Doplot to display 2 metadata variables
7 weeks ago by fracarb8 ★ 1.6k
0
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0
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295
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Answer: Answer: Error in changing the annotation color of pheatmap
8 weeks ago by fracarb8 ★ 1.6k
0
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0
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632
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Answer: Answer: Downsampling of cells in scRNAseq DE analysis
10 weeks ago by fracarb8 ★ 1.6k
1
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0
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296
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Answer: Answer: getting error when transfer labels for my scRNAseq data using FindTransferAnchor
10 weeks ago by fracarb8 ★ 1.6k
0
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0
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341
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Answer: Answer: Speed up FindClusters execution?
10 weeks ago by fracarb8 ★ 1.6k
1
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1
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1.7k
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Answer: Answer: JoinLayers to find markers in merged or integrated analysis in seurat
12 weeks ago by fracarb8 ★ 1.6k
0
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0
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624
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Answer: Answer: Monocle3 gene expression dot plot with a cell data set object (need help with re
4 months ago by fracarb8 ★ 1.6k
2
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1
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444
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Answer: Answer: convert dataframe R
5 months ago by fracarb8 ★ 1.6k
0
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0
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1.9k
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Answer: Answer: DoubletFinder for Python?
5 months ago by fracarb8 ★ 1.6k
2
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0
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897
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by fracarb8 ★ 1.6k
1
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0
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420
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Answer: Answer: seurat-creating heatmaps
6 months ago by fracarb8 ★ 1.6k
2
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1
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1.2k
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Answer: Answer: Bioinformatics software for single cell omics
6 months ago by fracarb8 ★ 1.6k
0
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1
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2.5k
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Answer: Answer: Code for reading h5ad files in R
6 months ago by fracarb8 ★ 1.6k
1
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0
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614
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Answer: Answer: How to get ncol = nrow?
updated 7 months ago by 43k • written 7 months ago by ★ 1.6k
1
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0
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1.3k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
updated 7 months ago by 43k • written 7 months ago by ★ 1.6k
0
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0
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757
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Answer: Answer: Add samples IDs to Seurat object when integrating different samples to do differ
updated 7 months ago by 43k • written 7 months ago by ★ 1.6k
1
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0
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1.5k
views
Answer: Answer: How do I install DSSP?
7 months ago by fracarb8 ★ 1.6k
2
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2
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1.3k
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Answer: Answer: Selecting MOUSE gene set libraries in Enrichr
8 months ago by fracarb8 ★ 1.6k
1
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0
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682
views
Answer: Answer: UMAP graph using DimPlot pre/post integration
8 months ago by fracarb8 ★ 1.6k
0
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1
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1.6k
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Answer: Answer: Negative Expression in RNA Assay on Dot Plot After SCT Transform
8 months ago by fracarb8 ★ 1.6k
0
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0
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2.5k
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Answer: Answer: InferCNV results interpretation
8 months ago by fracarb8 ★ 1.6k
1
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0
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986
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Answer: Answer: Can I using scVI to integrate data, then using R to conduct following analysis?
8 months ago by fracarb8 ★ 1.6k
1
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0
replies
1.5k
views
Answer: Answer: Change transparency/alpha in seurat's vlnPlot()
9 months ago by fracarb8 ★ 1.6k
1
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0
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561
views
Answer: Answer: HeatMap, R, Rownames
10 months ago by fracarb8 ★ 1.6k
0
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1
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833
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Answer: Answer: How to obtain cell-cell interaction list
10 months ago by fracarb8 ★ 1.6k
5
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1
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2.4k
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Answer: Answer: In Scanpy, how to RDS file and merge it with other Scanpy objects.
10 months ago by fracarb8 ★ 1.6k
7
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0
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5.5k
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Answer: Answer: Convert Human to Mouse Symbols
10 months ago by fracarb8 ★ 1.6k
0
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0
replies
787
views
Answer: Answer: Uploading 10x Data into R for Monocle 3
10 months ago by fracarb8 ★ 1.6k
0
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0
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691
views
Answer: Answer: What kind of statistical test does Cellranger count use?
11 months ago by fracarb8 ★ 1.6k
2
votes
0
replies
4.0k
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Answer: Answer: Seurat 'DoHeatmap()' hierarchical clustering
11 months ago by fracarb8 ★ 1.6k
0
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1
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21k
views
Answer: Answer: How to get subset of a Seurat object based on metadata?
13 months ago by fracarb8 ★ 1.6k
0
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1
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1.2k
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Answer: Answer: Getting unspliced counts for scRNA-seq data generated from cellranger aggr pipel
14 months ago by fracarb8 ★ 1.6k
0
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1
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2.1k
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Answer: Answer: How to solve a possible memory issues with Seurat and IntegrateData step?
14 months ago by fracarb8 ★ 1.6k
0
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1
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672
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Answer: Answer: exchange the monocle data with Seurat
15 months ago by fracarb8 ★ 1.6k
2
votes
1
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863
views
Answer: Answer: bash script error to copy files from multiple directories to one directory
17 months ago by fracarb8 ★ 1.6k
1
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0
replies
569
views
Answer: Answer: Extract Monocle2 "State" for Seurat
18 months ago by fracarb8 ★ 1.6k
0
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1
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1.7k
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Answer: Answer: Tuning seurat integration strength to prevent overcorrection
19 months ago by fracarb8 ★ 1.6k
0
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0
replies
737
views
Answer: Answer: What is the best way to process a metadata file that SEURAT can read?
20 months ago by fracarb8 ★ 1.6k
1
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1
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3.1k
views
Answer: Answer: SCTransform and differential gene expression
20 months ago by fracarb8 ★ 1.6k
0
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0
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962
views
Answer: Answer: Clustered, annotated dotplot to scRNA-Seq data
22 months ago by fracarb8 ★ 1.6k
1
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1
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1.9k
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Answer: Answer: ESTIMATE tumor purity
22 months ago by fracarb8 ★ 1.6k
1
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1
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2.8k
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Answer: Answer: What to do with Seurat metadata and counts in separate text files?
23 months ago by fracarb8 ★ 1.6k
0
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1
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1.1k
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Answer: Answer: How to add Ensembl id to cluster.markers in Seurat
23 months ago by fracarb8 ★ 1.6k
2
votes
0
replies
1.1k
views
Answer: Answer: Error on R shiny app metaOmics; object %AND% not found
23 months ago by fracarb8 ★ 1.6k
0
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0
replies
1.7k
views
Answer: Answer: Automatic rename of filenames with bash script
23 months ago by fracarb8 ★ 1.6k
1
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1
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2.0k
views
Answer: Answer: Normalization of RNASeq counts with a reference gene (/genes)
24 months ago by fracarb8 ★ 1.6k
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