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3
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Answer: Answer: use gene symbol in heatmap instead of ensemble geneID
24 months ago by fracarb8 ★ 1.6k
0
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0
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947
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Answer: Answer: How to test for gender bias in RNA seq experiment ?
2.0 years ago by fracarb8 ★ 1.6k
1
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0
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870
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Answer: Answer: When looking at a heatmap created by DESeq2, how can I find what genes are in sp
2.1 years ago by fracarb8 ★ 1.6k
1
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0
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1.9k
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Answer: Answer: MAST for scRNA-seq
2.1 years ago by fracarb8 ★ 1.6k
0
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1
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508
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Answer: Answer: How to get DEG considering "clusters" and "samples" at the same time
2.1 years ago by fracarb8 ★ 1.6k
0
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0
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1.8k
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Answer: Answer: Is there a tool for plotting protein structures and domains?
2.2 years ago by fracarb8 ★ 1.6k
2
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1
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1.1k
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Answer: Answer: How can I add the information at the end of the line to the beginning of the lin
2.2 years ago by fracarb8 ★ 1.6k
2
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0
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1.3k
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Answer: Answer: Enrichment plot in R with custom pathways
2.2 years ago by fracarb8 ★ 1.6k
0
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0
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1.0k
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Answer: Answer: scRNA and stemness score
2.3 years ago by fracarb8 ★ 1.6k
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0
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3.1k
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Answer: Answer: Spatial transcriptomics without the h5 file
2.3 years ago by fracarb8 ★ 1.6k
1
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0
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642
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Answer: Answer: Which method works best for analysing ONE sample of scRNA-seq data?
2.3 years ago by fracarb8 ★ 1.6k
0
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0
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1.9k
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Answer: Answer: Sub clustering from Seurat Object
2.3 years ago by fracarb8 ★ 1.6k
2
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1
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3.3k
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Answer: Answer: How can I colour UMAP by sample batches
2.3 years ago by fracarb8 ★ 1.6k
4
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2
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1.5k
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Answer: Answer: Forcing Seurat to include certain genes during integration
2.3 years ago by fracarb8 ★ 1.6k
1
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1
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8.7k
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Answer: Answer: seurat, subcluster and trajectory analysis (Monocle 3)
2.4 years ago by fracarb8 ★ 1.6k
0
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1
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6.0k
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Answer: Answer: What is a count matrix for input into Seurat supposed to look like?
2.4 years ago by fracarb8 ★ 1.6k
1
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0
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903
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Answer: Answer: Estimate cell types proportion by single cell expressions data and gene markers
2.4 years ago by fracarb8 ★ 1.6k
3
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1
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5.6k
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Answer: Answer: Extract ENSEMBL IDs from processed Seurat object instead of gene symbols
2.4 years ago by fracarb8 ★ 1.6k
0
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1
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1.5k
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Answer: Answer: just trying to launching my DE-seq2 by csv but isn't work...
2.4 years ago by fracarb8 ★ 1.6k
4
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3
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3.2k
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Answer: Answer: Grouping datasets in Seurat
2.4 years ago by fracarb8 ★ 1.6k
1
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0
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1.1k
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Answer: Answer: How to know if certain gene is highly expressed compared to some common housekee
2.5 years ago by fracarb8 ★ 1.6k
3
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1
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4.7k
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Answer: Answer: Seurat-Merging and integrate
2.5 years ago by fracarb8 ★ 1.6k
0
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0
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1.5k
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Answer: Answer: TCGAbiolinks: which normalization before differential expression analysis (legac
2.6 years ago by fracarb8 ★ 1.6k
2
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1
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4.7k
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Answer: Answer: Seurat re-clustering a cell subset but cell identity numbers are not completely
2.7 years ago by fracarb8 ★ 1.6k
3
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0
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1.5k
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Answer: Answer: %% error in Rstudio
2.7 years ago by fracarb8 ★ 1.6k
1
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0
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4.3k
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Answer: Answer: Manual annotation of cell types in single cell RNA-seq
2.7 years ago by fracarb8 ★ 1.6k
1
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1
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1.3k
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Answer: Answer: Does scRNA-seq Tabula Sapiens store: counts or log2( 1+counts ) or most probab
2.7 years ago by fracarb8 ★ 1.6k
1
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0
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3.4k
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Answer: Answer: Recommended PC Hardware for Molecular Dynamics in 2021
2.8 years ago by fracarb8 ★ 1.6k
0
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1
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1.6k
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Answer: Answer: How to view if a gene is protein-coding?
2.8 years ago by fracarb8 ★ 1.6k
1
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1
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3.6k
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Answer: Answer: How to create a table for Cell, Gene, UMI using a seurat object
2.8 years ago by fracarb8 ★ 1.6k
2
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0
replies
2.9k
views
Answer: Answer: Normalization after merging Seurat objects
2.8 years ago by fracarb8 ★ 1.6k
1
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1
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1.9k
views
Answer: Answer: Using log2(TPM/10+1) values in Seurat
2.9 years ago by fracarb8 ★ 1.6k
2
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1
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848
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Answer: Answer: How to associate secondary structure to protein sequence
3.0 years ago by fracarb8 ★ 1.6k
3
votes
0
replies
4.7k
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Answer: Answer: Make New Orig.ident in seurat object or
3.0 years ago by fracarb8 ★ 1.6k
0
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0
replies
971
views
Answer: Answer: scRNA sequence compare between conditions and get differentially expressed genes
3.1 years ago by fracarb8 ★ 1.6k
2
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1
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6.3k
views
Answer: A: Adding extra labels (lines and text) in pheatmap R
3.1 years ago by fracarb8 ★ 1.6k
3
votes
0
replies
1.1k
views
Answer: A: determine the robustness of single-cell clusters
3.2 years ago by fracarb8 ★ 1.6k
3
votes
2
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5.0k
views
Answer: A: regressing out covariate from Seurat integrated data
3.2 years ago by fracarb8 ★ 1.6k
0
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2
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1.7k
views
Answer: A: Is there other IDE like R studio working on the linux?
3.2 years ago by fracarb8 ★ 1.6k
0
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1
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4.3k
views
Answer: A: Set.seed in Seurat
3.5 years ago by fracarb8 ★ 1.6k
4
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1
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9.6k
views
Answer: A: Adding UMAP coordinates to metadata
3.5 years ago by fracarb8 ★ 1.6k
0
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1
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1.5k
views
Answer: A: Converting this matrix to a binary matrix
4.7 years ago by fracarb8 ★ 1.6k
0
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0
replies
2.3k
views
Answer: A: Iteration of the Biomart search command on the entire list of rsIDs in a file
4.9 years ago by fracarb8 ★ 1.6k
1
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1
reply
1.9k
views
Answer: A: Automation for Energy Minimizing protien structure
4.9 years ago by fracarb8 ★ 1.6k
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