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2
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2.5k
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Answer: Answer: Somatic Sniper install
updated 3.6 years ago by 45k • written 10.8 years ago by 6.1k
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Comment: C: How to determine whether a gene is present or absent?
10.8 years ago by Cyriac Kandoth 6.1k
1
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3
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5.3k
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Answer: Answer: How to determine whether a gene is present or absent?
updated 3.6 years ago by 45k • written 10.8 years ago by 6.1k
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0
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15k
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Comment: Comment: Help understanding the non-coding exons in a gene.
updated 3.6 years ago by 45k • written 10.8 years ago by 6.1k
2
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2
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15k
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Answer: Answer: Help understanding the non-coding exons in a gene.
updated 3.6 years ago by 45k • written 10.8 years ago by 6.1k
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0
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2.2k
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Answer: A: ROI file for MuSic
10.8 years ago by Cyriac Kandoth 6.1k
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0
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3.5k
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Comment: C: Slow Download From TCGA
10.8 years ago by Cyriac Kandoth 6.1k
2
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0
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3.5k
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Answer: A: Slow Download From TCGA
10.8 years ago by Cyriac Kandoth 6.1k
0
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2
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59k
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Comment: C: Working With Maf Files (Mutation Annotation Format) From The Tcga (The Cancer Ge
10.8 years ago by Cyriac Kandoth 6.1k
1
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1
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7.0k
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Comment: C: Finding significant overlap of mutations in a specific cancer tumors and its rep
10.8 years ago by Cyriac Kandoth 6.1k
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2.8k
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Comment: C: Can we do unsupervised clustering of Varscan output based on variant frequencies
10.8 years ago by Cyriac Kandoth 6.1k
4
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1
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6.2k
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Answer: A: Tool or Script to convert MAF file to VCF ?
10.8 years ago by Cyriac Kandoth 6.1k
0
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0
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3.5k
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Comment: Comment: Error while running vcf2maf utility
updated 3.6 years ago by 45k • written 10.8 years ago by 6.1k
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0
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59k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
1
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1
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3.5k
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Answer: Answer: Error while running vcf2maf utility
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
0
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0
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5.1k
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Comment: Comment: The variance gene for normal people as the control set compared with TCGA gene m
updated 3.8 years ago by 45k • written 10.9 years ago by 6.1k
0
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1
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59k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
0
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1
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17k
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Comment: C: Anyone Has A Working Example On How To Run Broad'S Absolute On Exome Sequencing
10.9 years ago by Cyriac Kandoth 6.1k
2
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1
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3.6k
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Answer: Answer: Program to prioritize silent SNVs?
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
1
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0
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3.9k
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Comment: Comment: Problems running Genome MuSiC Play
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
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0
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15k
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Comment: C: Do I need to normalize level 3 TCGA data?
10.9 years ago by Cyriac Kandoth 6.1k
3
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1
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28k
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Answer: A: The New Grch38 Human Genome Browser Has Arrived!
10.9 years ago by Cyriac Kandoth 6.1k
2
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0
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28k
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Comment: C: The New Grch38 Human Genome Browser Has Arrived!
10.9 years ago by Cyriac Kandoth 6.1k
1
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0
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2.3k
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Answer: Answer: On what strand are the mutations shown in MAF files
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
1
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0
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10k
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Comment: Comment: MAF (minor allele frequency) calculation for finding rare variants from TCGA
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
0
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1
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3.9k
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Answer: Answer: Problems running Genome MuSiC Play
updated 3.6 years ago by 45k • written 10.9 years ago by 6.1k
4
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1
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5.9k
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Answer: Answer: How to download a specific sample from TCGA ?
updated 4.5 years ago by 45k • written 10.9 years ago by 6.1k
0
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0
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59k
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Comment: C: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
10.9 years ago by Cyriac Kandoth 6.1k
1
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2
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59k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 3.7 years ago by 45k • written 10.9 years ago by 6.1k
0
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0
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39k
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Comment: C: Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs D
10.9 years ago by Cyriac Kandoth 6.1k
0
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0
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3.4k
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Comment: C: liftover a fasta file
11.0 years ago by Cyriac Kandoth 6.1k
1
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0
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4.6k
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Answer: Answer: VariantRecalibrator Error message
updated 3.7 years ago by 45k • written 11.0 years ago by 6.1k
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0
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2.2k
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Comment: Comment: Is there an information source that lists the differences between clonal and par
updated 3.7 years ago by 45k • written 11.0 years ago by 6.1k
0
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1
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7.9k
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Comment: C: Doesn't Base Quality Score Recalibration degrade sensitivity in heavily mutated
11.0 years ago by Cyriac Kandoth 6.1k
1
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0
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4.3k
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Comment: C: TCGA Clinical Data "Inconsistency"?
11.0 years ago by Cyriac Kandoth 6.1k
0
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1
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12k
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Comment: C: TCGA CNV Files
11.0 years ago by Cyriac Kandoth 6.1k
1
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0
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7.9k
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Comment: Comment: Doesn't Base Quality Score Recalibration degrade sensitivity in heavily mutated
updated 3.7 years ago by 45k • written 11.1 years ago by 6.1k
0
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1
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15k
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Comment: C: Do I need to normalize level 3 TCGA data?
11.1 years ago by Cyriac Kandoth 6.1k
3
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1
reply
15k
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Answer: A: Do I need to normalize level 3 TCGA data?
11.1 years ago by Cyriac Kandoth 6.1k
0
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1
reply
15k
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Comment: C: Do I need to normalize level 3 TCGA data?
11.1 years ago by Cyriac Kandoth 6.1k
2
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0
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6.5k
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Comment: Comment: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
updated 3.7 years ago by 45k • written 11.1 years ago by 6.1k
4
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1
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21k
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Answer: A: Vcf To Maf (Mutation Annotation Format) Conversion ?
11.1 years ago by Cyriac Kandoth 6.1k
0
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0
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2.9k
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Comment: C: Is Music suitable for cancers with few somatic mutations
11.1 years ago by Cyriac Kandoth 6.1k
3
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0
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2.8k
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Answer: Answer: Which result of p_value test should be chosen in Music
updated 3.8 years ago by 45k • written 11.1 years ago by 6.1k
1
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2
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2.9k
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Answer: Answer: Is Music suitable for cancers with few somatic mutations
updated 3.8 years ago by 45k • written 11.1 years ago by 6.1k
1
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1
reply
13k
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Comment: C: problems with MAF for MutSigCV (vcf2maf)
11.1 years ago by Cyriac Kandoth 6.1k
1
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0
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5.5k
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Comment: Comment: Music Analysis Workflow
updated 3.8 years ago by 45k • written 11.1 years ago by 6.1k
0
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0
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59k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 3.8 years ago by 45k • written 11.1 years ago by 6.1k
1
vote
1
reply
59k
views
Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 3.8 years ago by 45k • written 11.2 years ago by 6.1k
0
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1
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17k
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Comment: C: Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing
11.2 years ago by Cyriac Kandoth 6.1k
280 results • Page 4 of 6
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