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3
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0
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1.2k
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Answer: Answer: Detecting somatic variants in non-tumor tissue without normals
22 months ago by Cyriac Kandoth 6.1k
0
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1
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1.3k
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Comment: Comment: vcf2maf cosmic annotation
2.2 years ago by Cyriac Kandoth 6.1k
0
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1
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1.6k
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Comment: Comment: Identify if variants are somatic or germline from VCF file
2.2 years ago by Cyriac Kandoth 6.1k
4
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0
replies
956
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Answer: Answer: How to identify whether the sample is from only one person and whether the sampl
2.6 years ago by Cyriac Kandoth 6.1k
0
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0
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4.4k
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Answer: Answer: Understanding VCF abbreviations
2.8 years ago by Cyriac Kandoth 6.1k
1
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0
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14k
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Comment: Comment: Best Hardware Solution For Medium-Size Bioinformatics Lab [15-20 Computers]
3.0 years ago by Cyriac Kandoth 6.1k
5
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2
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14k
views
Answer: Answer: Best Hardware Solution For Medium-Size Bioinformatics Lab [15-20 Computers]
3.1 years ago by Cyriac Kandoth 6.1k
0
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1
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5.4k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.9 years ago by Cyriac Kandoth 6.1k
6
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1
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5.4k
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Answer: Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.9 years ago by Cyriac Kandoth 6.1k
3
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1
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3.6k
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Answer: Answer: Is it possible to detect of SNVs and InDels in low coverage WGS (5-10X) data?
4.0 years ago by Cyriac Kandoth 6.1k
0
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0
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3.6k
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Comment: Comment: Is it possible to detect of SNVs and InDels in low coverage WGS (5-10X) data?
4.0 years ago by Cyriac Kandoth 6.1k
0
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0
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2.0k
views
Job: Bioinformatics Engineer, Molecular Diagnostics Labs, UCLA Health
scientist clinical variant bioinformatician engineer
4.0 years ago by Cyriac Kandoth 6.1k
2
votes
1
reply
1.5k
views
Comment: Comment: somatic short variant calling from patients having autoimmune disease
4.1 years ago by Cyriac Kandoth 6.1k
1
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0
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4.0k
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Comment: Comment: TCGA Sample barcode
4.3 years ago by Cyriac Kandoth 6.1k
1
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0
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4.0k
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Comment: Comment: TCGA Sample barcode
4.3 years ago by Cyriac Kandoth 6.1k
1
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0
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7.4k
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Comment: Comment: Good annotation databases for a VCF file (somatic variants)
4.3 years ago by Cyriac Kandoth 6.1k
3
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1
reply
7.4k
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Answer: Answer: Good annotation databases for a VCF file (somatic variants)
4.3 years ago by Cyriac Kandoth 6.1k
0
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0
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59k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
4.3 years ago by Cyriac Kandoth 6.1k
3
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1
reply
8.2k
views
Answer: Answer: How to convert maf to vcf while retaining original mutation notations?
4.4 years ago by Cyriac Kandoth 6.1k
1
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0
replies
1.1k
views
Job: Positions at Molecular Diagnostics Labs, UCLA Health
variant clinical scientist curator molecular
3.9 years ago by Cyriac Kandoth 6.1k
4
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0
replies
7.9k
views
Answer: A: Doesn't Base Quality Score Recalibration degrade sensitivity in heavily mutated
4.6 years ago by Cyriac Kandoth 6.1k
16
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2
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8.5k
views
Job: Open positions at the Center for Molecular Oncology, MSKCC, New York
sequencing cancer R python genetics
3.9 years ago by Cyriac Kandoth 6.1k
43
votes
6
replies
13k
views
Tutorial: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
ensembl maf tcga vcf
updated 2.5 years ago by 45k • written 11.6 years ago by 6.1k
0
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1
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6.8k
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Answer: A: Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a
4.8 years ago by Cyriac Kandoth 6.1k
0
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0
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4.8k
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Comment: C: Inferring zygosity information from MAF
5.7 years ago by Cyriac Kandoth 6.1k
0
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0
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59k
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Comment: C: Working With Maf Files (Mutation Annotation Format) From The Tcga (The Cancer Ge
updated 5.7 years ago by 45k • written 11.3 years ago by 6.1k
2
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0
replies
8.5k
views
Answer: A: Strelka Indel Allele Counts
updated 5.7 years ago by 45k • written 11.4 years ago by 6.1k
5
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1
reply
11k
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Answer: A: How To Use Maf Files In The Absolute Software
updated 5.7 years ago by 45k • written 11.6 years ago by 6.1k
3
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0
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3.1k
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Answer: A: MuSiC original files for testing/ MAF, rois and soo on
updated 5.8 years ago by 45k • written 9.8 years ago by 6.1k
0
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0
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2.9k
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Comment: C: genome music bmr calc-covg [Run in parallel]
updated 5.8 years ago by 45k • written 9.8 years ago by 6.1k
0
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1
reply
5.7k
views
Answer: A: TCGA somatic mutation
updated 5.8 years ago by 45k • written 9.9 years ago by 6.1k
0
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0
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3.7k
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Answer: A: dn/ds ratio for somatic mutation
updated 5.8 years ago by 45k • written 9.9 years ago by 6.1k
1
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0
replies
7.4k
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Answer: A: TCGA Tumor matched Normal and Normal matched Tumor do not have the same number o
updated 5.8 years ago by 45k • written 9.9 years ago by 6.1k
0
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0
replies
3.4k
views
Comment: C: TCGA 2011 Ovarian Data Germline BRCA1/2 status
updated 5.8 years ago by 45k • written 9.9 years ago by 6.1k
2
votes
1
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3.4k
views
Answer: A: TCGA Mutation Annotation Files (MAFs) with ref_context column
updated 5.9 years ago by 45k • written 10.2 years ago by 6.1k
0
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0
replies
8.5k
views
Comment: C: Open positions at the Center for Molecular Oncology, MSKCC, New York
5.9 years ago by Cyriac Kandoth 6.1k
4
votes
2
replies
3.4k
views
Answer: Answer: Compendium of validated somatic variant calls with associated reads and referenc
updated 3.4 years ago by 45k • written 10.6 years ago by 6.1k
2
votes
1
reply
8.0k
views
Answer: A: How can I convert a tab delemeted file to vcf format using vcf-annotate tool?
updated 5.9 years ago by 45k • written 10.8 years ago by 6.1k
2
votes
1
reply
7.0k
views
Answer: Answer: Finding significant overlap of mutations in a specific cancer tumors and its rep
updated 3.6 years ago by 45k • written 10.8 years ago by 6.1k
11
votes
3
replies
13k
views
Answer: A: problems with MAF for MutSigCV (vcf2maf)
updated 5.9 years ago by 45k • written 11.1 years ago by 6.1k
3
votes
0
replies
6.1k
views
Answer: A: annotating MAF files
updated 5.9 years ago by 45k • written 11.1 years ago by 6.1k
1
vote
1
reply
4.8k
views
Answer: A: Inferring zygosity information from MAF
updated 5.9 years ago by 45k • written 11.1 years ago by 6.1k
0
votes
0
replies
19k
views
Comment: C: Installation Of The Music Suite On Unsupported Linux Distributions
updated 5.9 years ago by 45k • written 11.9 years ago by 6.1k
3
votes
1
reply
6.0k
views
Answer: A: Best Reference Sequence For Music And "Bit_Test" Error
updated 5.9 years ago by 45k • written 12.0 years ago by 6.1k
1
vote
0
replies
31k
views
Comment: C: Human dna reference file with no prefix 'chr'
updated 6.0 years ago by 45k • written 10.8 years ago by 6.1k
0
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0
replies
31k
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Comment: C: Human dna reference file with no prefix 'chr'
updated 6.0 years ago by 45k • written 10.8 years ago by 6.1k
2
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0
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5.8k
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Answer: A: Karyotypically Sorted Genome Assembly
updated 6.0 years ago by 45k • written 11.9 years ago by 6.1k
0
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0
replies
14k
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Comment: C: Variant allele frequency in TCGA and ICGC
updated 6.4 years ago by 45k • written 9.8 years ago by 6.1k
0
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0
replies
14k
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Comment: C: Variant allele frequency in TCGA and ICGC
updated 6.4 years ago by 45k • written 9.8 years ago by 6.1k
0
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0
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7.0k
views
Comment: C: How to convert vcf to MAF ?
6.5 years ago by Cyriac Kandoth 6.1k
280 results • Page 1 of 6
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