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Comment: C: Illumina hiseq and pacbio isoseq data on same set of samples- combined analysis
10.1 years ago by User 59 13k
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Answer: Answer: Recent comparison of BWA-mem versus Berkeley SNAP aligner, TP, TN and speed.
updated 3.2 years ago by 45k • written 10.1 years ago by 13k
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Comment: C: Standardizing the language of lab protocols [Current status]
10.2 years ago by User 59 13k
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Comment: C: Standardizing the language of lab protocols [Current status]
10.2 years ago by User 59 13k
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5.3k
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Comment: C: variant calling on amplicon data
10.2 years ago by User 59 13k
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2.0k
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Answer: Answer: what is third column in the log file output for pacBioToCA
updated 3.5 years ago by 45k • written 10.2 years ago by 13k
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Answer: Answer: What is the best tagger that can be used to identify Sequence variants from free
updated 3.1 years ago by 45k • written 10.2 years ago by 13k
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6.3k
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Comment: Comment: Variant calling for MNP
updated 3.1 years ago by 45k • written 10.2 years ago by 13k
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6.3k
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Answer: Answer: Variant calling for MNP
updated 3.1 years ago by 45k • written 10.2 years ago by 13k
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11k
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Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
10.3 years ago by User 59 13k
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11k
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Comment: Comment: Bait/Target files for Picard HsMetrics (Exome Sequencing)
updated 3.1 years ago by 45k • written 10.3 years ago by 13k
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11k
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Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
10.3 years ago by User 59 13k
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5.4k
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Comment: C: Quality contraol on 454 data
10.3 years ago by User 59 13k
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9.2k
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Comment: C: Role of amino-acid change number
10.3 years ago by User 59 13k
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5.3k
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Comment: Comment: Lower GATK's HaplotypeCaller threshold for allele frequency as part of variant c
updated 3.1 years ago by 45k • written 10.3 years ago by 13k
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9.2k
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Answer: C: Role of amino-acid change number
10.3 years ago by User 59 13k
2
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5.3k
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Answer: Answer: Lower GATK's HaplotypeCaller threshold for allele frequency as part of variant c
updated 3.1 years ago by 45k • written 10.3 years ago by 13k
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2.6k
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Comment: Comment: PseudoPipe is very hassle to configure
updated 3.1 years ago by 45k • written 10.3 years ago by 13k
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2.4k
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Comment: C: limma: can a separate channel microarray analysis done with this setup
10.3 years ago by User 59 13k
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4.1k
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Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 3.0 years ago by 45k • written 10.3 years ago by 13k
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4.1k
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Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 3.0 years ago by 45k • written 10.3 years ago by 13k
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5.7k
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Comment: C: Mapping HGNC ID to uniprot ID
10.3 years ago by User 59 13k
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4.4k
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Comment: Comment: DESeq pvalue>0.05 qvalue=1
updated 3.0 years ago by 45k • written 10.3 years ago by 13k
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2.2k
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Comment: C: Metagenomics with Illumina, all species genomes coverd by reads or not?
10.3 years ago by User 59 13k
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Answer: Answer: Metagenomics with Illumina, all species genomes coverd by reads or not?
updated 3.0 years ago by 45k • written 10.4 years ago by 13k
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Answer: Answer: Is there a list of mouse housekeeping genes available to download?
updated 3.0 years ago by 45k • written 10.4 years ago by 13k
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2.7k
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Comment: C: family based linkage study - design and analysis
10.4 years ago by User 59 13k
2
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1
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5.2k
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Answer: Answer: A Bioinformatics Career for an Effective Altruist?
updated 2.9 years ago by 45k • written 10.4 years ago by 13k
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9.3k
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Comment: C: Limiting variant calls to amplicon target regions?
10.4 years ago by User 59 13k
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9.3k
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Answer: A: Limiting variant calls to amplicon target regions?
10.4 years ago by User 59 13k
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5.5k
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Answer: Answer: Publicly available Rna-Seq count data
updated 2.9 years ago by 45k • written 10.4 years ago by 13k
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3.2k
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Comment: Comment: Clinical MiSeq and Compute Systems
updated 2.9 years ago by 45k • written 10.4 years ago by 13k
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1
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3.2k
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Answer: Answer: Clinical MiSeq and Compute Systems
updated 2.9 years ago by 45k • written 10.4 years ago by 13k
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2.9k
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Comment: Comment: newbler installation in ubuntu
updated 2.9 years ago by 45k • written 10.5 years ago by 13k
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Answer: Answer: Platforms and Pipelines Bioinformatician, TGAC - Norwich, UK
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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Answer: Answer: From fastq file to vcf file (inconsistent vcf file from two methods)
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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3.9k
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Comment: Comment: No Somatic SNV Calling with GATK?
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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3.9k
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Comment: C: No Somatic SNV Calling with GATK?
10.5 years ago by User 59 13k
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7.6k
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Comment: Comment: Is Smith Waterman ever used?
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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1
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3.7k
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Comment: C: Platforms and Pipelines Bioinformatics Manager, Genome Analysis Centre (TGAC),
10.5 years ago by User 59 13k
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3.4k
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Comment: C: cuffdiff was killed without any information?
10.5 years ago by User 59 13k
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1
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3.4k
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Answer: A: cuffdiff was killed without any information?
10.5 years ago by User 59 13k
6
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38k
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Answer: Answer: Help a graduate student going into Bioinformatics looking for a new personal lap
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
4
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6.6k
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Answer: Answer: Is it possible to convert fastq format to PacBio bax.h5 file?
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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1
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2.4k
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Comment: Comment: error in flexarray
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
1
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1
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4.2k
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Comment: Comment: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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0
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3.2k
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Answer: Answer: Pipeline for exome sequencing
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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2.6k
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Answer: Answer: Why Iontorrent PGM generates high percent of duplicates?
updated 2.8 years ago by 45k • written 10.5 years ago by 13k
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0
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4.2k
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Answer: A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
10.6 years ago by User 59 13k
0
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0
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2.4k
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Answer: Answer: error in flexarray
updated 3.4 years ago by 45k • written 10.6 years ago by 13k
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