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2
votes
2
replies
7.7k
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Answer: A: Convert GVF to VCF
9.9 years ago by Ying W ★ 4.3k
0
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0
replies
3.1k
views
Answer: A: representation of chipseq and RNA-seq data
10.0 years ago by Ying W ★ 4.3k
10
votes
2
replies
11k
views
Answer: Answer: What statistical test does DESeq use?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 4.3k
5
votes
1
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9.2k
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Answer: A: Difference between various GRCH 37 releases?
10.0 years ago by Ying W ★ 4.3k
1
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1
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4.7k
views
Answer: Answer: tag density v.s. binding affinity v.s. signal value
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 4.3k
0
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0
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3.6k
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Answer: A: TCGA data looks different on ICGC
10.0 years ago by Ying W ★ 4.3k
5
votes
0
replies
11k
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Answer: Answer: Comparing two ChIP-seq libraries
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 4.3k
0
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0
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2.4k
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Answer: A: calling 1000G SNPs/indels from ngs data (chipseq or other source)
10.1 years ago by Ying W ★ 4.3k
1
vote
0
replies
3.1k
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Answer: A: Which journal do you frequently read/recommend for reviews/updates in computatio
10.1 years ago by Ying W ★ 4.3k
0
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1
reply
7.9k
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Answer: A: What is trace in R's heatmap.2 function?
10.1 years ago by Ying W ★ 4.3k
1
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0
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2.8k
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Answer: A: Chip-seq common control for two treatments
10.1 years ago by Ying W ★ 4.3k
5
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1
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9.4k
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Answer: A: Seqlogo and Homer
10.2 years ago by Ying W ★ 4.3k
3
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0
replies
6.0k
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Answer: A: How can I programmatically download the GEO DataSets of a given accession?
10.2 years ago by Ying W ★ 4.3k
2
votes
0
replies
4.8k
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Answer: A: chipseq data normalization
10.5 years ago by Ying W ★ 4.3k
1
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1
reply
5.4k
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Answer: A: Which kind of microRNAs expression are measured in TCGA?
10.6 years ago by Ying W ★ 4.3k
1
vote
1
reply
3.7k
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Answer: A: Illumina Microarray Annotation
10.6 years ago by Ying W ★ 4.3k
2
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2
replies
8.4k
views
Answer: A: WGCNA with time series data
10.6 years ago by Ying W ★ 4.3k
1
vote
1
reply
4.1k
views
Answer: A: Constructing Compute Resources In Support Of Ngs In A Hospital Setting
10.8 years ago by Ying W ★ 4.3k
0
votes
0
replies
2.6k
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Answer: A: Mat Algorithm Score For Chip Chip Data
10.8 years ago by Ying W ★ 4.3k
1
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0
replies
4.6k
views
Answer: A: Meaning Of Negative Values In Wig File?
10.8 years ago by Ying W ★ 4.3k
1
vote
1
reply
3.9k
views
Answer: A: Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
updated 10.9 years ago by 3.5k • written 10.9 years ago by ★ 4.3k
1
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0
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5.5k
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Answer: A: What Next After Snp Identification
10.9 years ago by Ying W ★ 4.3k
2
votes
2
replies
4.8k
views
Answer: A: 1000G Query / Using Tabix With A Proxy
11.0 years ago by Ying W ★ 4.3k
2
votes
1
reply
9.1k
views
Answer: A: Illumina-Fastq To Sanger-Fastq Conversion
11.0 years ago by Ying W ★ 4.3k
2
votes
1
reply
6.4k
views
Answer: A: Per Sample Mpileup Output From Merged Bam File
11.0 years ago by Ying W ★ 4.3k
1
vote
0
replies
4.4k
views
Answer: A: Where Can I Find An Explanation For The Adm-2 Algorithm Used By Agilent For Arra
11.1 years ago by Ying W ★ 4.3k
3
votes
1
reply
7.8k
views
Answer: A: Best Practices For Using Fimo For Motif Scanning
11.1 years ago by Ying W ★ 4.3k
1
vote
1
reply
3.2k
views
Answer: A: Assemble Reads According To Blast Result
11.1 years ago by Ying W ★ 4.3k
0
votes
1
reply
4.8k
views
Answer: A: Using Genomicranges
11.1 years ago by Ying W ★ 4.3k
1
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0
replies
8.0k
views
Answer: A: What Are The Best Normalization Methods For Ngs Data
11.1 years ago by Ying W ★ 4.3k
0
votes
1
reply
4.0k
views
Answer: A: When Normalizing Chip-Seq Replicates, Is It Better To Normalize All Reads, Or On
11.1 years ago by Ying W ★ 4.3k
2
votes
0
replies
4.9k
views
Answer: A: Differential Regions In Histone Modification
11.1 years ago by Ying W ★ 4.3k
2
votes
0
replies
6.3k
views
Answer: A: Tool Or Technique To Find Co-Occuring Motifs Within Genomic Intervals That Corr
11.2 years ago by Ying W ★ 4.3k
3
votes
1
reply
23k
views
Answer: A: Create Heat Map Using Edger Output Data
11.2 years ago by Ying W ★ 4.3k
1
vote
0
replies
14k
views
Answer: A: Heatmap Of Read Coverage Around Tsss
11.2 years ago by Ying W ★ 4.3k
1
vote
0
replies
2.0k
views
Answer: A: Multiple Files For Reading,Heatmap And Saving
11.4 years ago by Ying W ★ 4.3k
1
vote
2
replies
7.6k
views
Answer: A: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
11.6 years ago by Ying W ★ 4.3k
1
vote
1
reply
4.4k
views
Answer: A: Extracting Sequences After "Motif" & Between Motifs In Multifasta File
11.7 years ago by Ying W ★ 4.3k
0
votes
0
replies
2.6k
views
Answer: A: Apply Idr On List Of Read Counts
11.7 years ago by Ying W ★ 4.3k
0
votes
0
replies
5.5k
views
Answer: A: Visualizing Up/Down Regulation Of Genes Based On Fold Change
11.7 years ago by Ying W ★ 4.3k
1
vote
1
reply
4.0k
views
Answer: A: Problems Filtering Probes From Series Matrix File With Bioconductor
updated 11.8 years ago by 102k • written 11.8 years ago by ★ 4.3k
3
votes
0
replies
10k
views
Answer: A: Difference Between Picards Mergebamalignment And Mergesamfiles
11.9 years ago by Ying W ★ 4.3k
2
votes
0
replies
23k
views
Answer: A: Sam File Format - Lesser Known Tips And Tricks
11.9 years ago by Ying W ★ 4.3k
0
votes
0
replies
3.3k
views
Answer: A: Gmap Output Statistics
11.9 years ago by Ying W ★ 4.3k
4
votes
0
replies
11k
views
Answer: A: Best Practice Approach In R To Processing Illumina Microarrays For Rna Profilin
11.9 years ago by Ying W ★ 4.3k
0
votes
0
replies
5.0k
views
Answer: A: Differential Open Chromatin Locations From Dnase-Seq Data
12.1 years ago by Ying W ★ 4.3k
0
votes
1
reply
6.6k
views
Answer: A: Cap3 Assembly
12.1 years ago by Ying W ★ 4.3k
2
votes
3
replies
6.8k
views
Answer: A: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
updated 12.2 years ago by 102k • written 12.7 years ago by ★ 4.3k
1
vote
0
replies
11k
views
Answer: A: Correlation Coefficient Between Chip-Seq Replicates
12.4 years ago by Ying W ★ 4.3k
1
vote
0
replies
2.4k
views
Answer: A: Tfbs Predictions For The Yeast And Pombe Genomes
12.5 years ago by Ying W ★ 4.3k
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