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Showing :
answers
7
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0
replies
32k
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Answer:
A: How to create a mutation landscape (waterfall) plot with GenVisR
8.1 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
3.1k
views
Answer:
A: bam-readcount returns warning
8.1 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
1.4k
views
Answer:
A: mutation detection in tumors samples
8.2 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
3.4k
views
Answer:
A: Tools to display mutations in a protein's structure
8.2 years ago by
poisonAlien
★ 3.2k
3
votes
1
reply
16k
views
Answer:
A: convert gene name to entrez id
8.2 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
1.5k
views
Answer:
Answer: any extra steps between using tophat and cufflinks
updated 21 months ago by
Ram
43k • written 8.2 years ago by
poisonAlien
★ 3.2k
3
votes
2
replies
4.6k
views
Answer:
Answer: illumina gene expression
updated 21 months ago by
Ram
43k • written 8.2 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
2.1k
views
Answer:
A: Genome Assembly for a Beginner
8.3 years ago by
poisonAlien
★ 3.2k
0
votes
1
reply
5.6k
views
Answer:
A: Difference Between SNP and Single Point Mutation in Cancer
8.3 years ago by
poisonAlien
★ 3.2k
2
votes
1
reply
2.2k
views
Answer:
Answer: Cancer signature, Transition/Transversion inclduing tri-nucleotide
updated 20 months ago by
Ram
43k • written 8.6 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
1.5k
views
Answer:
A: Realigner Target Creator step- I have been getting this error with all my datase
8.7 years ago by
poisonAlien
★ 3.2k
2
votes
0
replies
3.5k
views
Answer:
A: varscan2: merge the CNA segments using mergeSegments.pl
8.7 years ago by
poisonAlien
★ 3.2k
2
votes
1
reply
4.0k
views
Answer:
Answer: Counting mutated reads from RNA Seq data
updated 18 months ago by
Ram
43k • written 8.7 years ago by
poisonAlien
★ 3.2k
4
votes
1
reply
2.9k
views
Answer:
Answer: Draw multiple heatmaps
updated 18 months ago by
Ram
43k • written 8.7 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
2.8k
views
Answer:
A: Cancer genomics journals
8.8 years ago by
poisonAlien
★ 3.2k
7
votes
3
replies
9.1k
views
Answer:
Answer: how to make this plot for mutation?
updated 18 months ago by
Ram
43k • written 8.8 years ago by
poisonAlien
★ 3.2k
1
vote
2
replies
6.1k
views
Answer:
A: get biotype for refseq NM transcripts
8.8 years ago by
poisonAlien
★ 3.2k
2
votes
1
reply
5.5k
views
Answer:
Answer: How to combine expression values of multiple probes for one gene?
updated 18 months ago by
Ram
43k • written 8.8 years ago by
poisonAlien
★ 3.2k
3
votes
1
reply
2.7k
views
Answer:
Answer: How to evaluate RNA-seq quality if having three replicates?
updated 17 months ago by
Ram
43k • written 8.8 years ago by
poisonAlien
★ 3.2k
2
votes
1
reply
3.0k
views
Answer:
Answer: retrieving probeset ID of a gene from affymetrix database or anywhere alse
updated 16 months ago by
Ram
43k • written 8.9 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
2.4k
views
Answer:
Answer: Clinical utilization of NGS data in cancer research
updated 15 months ago by
Ram
43k • written 8.9 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
1.6k
views
Answer:
Answer: data pre-proccessing and matrix building in R
updated 15 months ago by
Ram
43k • written 9.0 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
33k
views
Answer:
Answer: Help a graduate student going into Bioinformatics looking for a new personal lap
updated 15 months ago by
Ram
43k • written 9.0 years ago by
poisonAlien
★ 3.2k
7
votes
1
reply
4.8k
views
Answer:
Answer: Any database on cancer related snp information
updated 15 months ago by
Ram
43k • written 9.0 years ago by
poisonAlien
★ 3.2k
1
vote
1
reply
8.8k
views
Answer:
Answer: What is the best practice for BAM sorting?
updated 22 months ago by
Ram
43k • written 9.1 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
18k
views
Answer:
Answer: GSEA Preranked analysis on RNA-SEQ
updated 22 months ago by
Ram
43k • written 9.1 years ago by
poisonAlien
★ 3.2k
3
votes
0
replies
2.4k
views
Answer:
Answer: An R function for fetching SNP annotations?
updated 23 months ago by
Ram
43k • written 9.1 years ago by
poisonAlien
★ 3.2k
2
votes
2
replies
2.5k
views
Answer:
Answer: Mapping a de novo built transcriptome to a reference transcriptome
updated 23 months ago by
Ram
43k • written 9.1 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
3.2k
views
Answer:
Answer: Varscan 2 output
updated 24 months ago by
Ram
43k • written 9.2 years ago by
poisonAlien
★ 3.2k
0
votes
1
reply
2.6k
views
Answer:
A: How can I detect false positive deletion in the output of Pindel tool?
9.2 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
2.5k
views
Answer:
Answer: count reference and alllele frequency from exome-seq bam
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
poisonAlien
★ 3.2k
2
votes
0
replies
1.5k
views
Answer:
Answer: Dedicated microarray analysis
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
poisonAlien
★ 3.2k
2
votes
0
replies
12k
views
Answer:
Answer: Map genetic mutations to protein domain/structure
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
poisonAlien
★ 3.2k
1
vote
0
replies
2.0k
views
Answer:
A: Identify significantly mutated genes in mouse cancer genome
9.5 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
2.5k
views
Answer:
Answer: NGS CNVtools with no controls
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
poisonAlien
★ 3.2k
10
votes
1
reply
3.5k
views
Answer:
Answer: Next Generation Sequencing
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
poisonAlien
★ 3.2k
3
votes
1
reply
25k
views
Answer:
Answer: TCGA RNA-Seq Data: RSEM and RPKM
updated 3.0 years ago by
Ram
43k • written 9.5 years ago by
poisonAlien
★ 3.2k
3
votes
1
reply
13k
views
Answer:
Answer: SNPs only output from bcftools
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
6.2k
views
Answer:
Answer: sciClone input, output and parameters
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
poisonAlien
★ 3.2k
0
votes
1
reply
2.2k
views
Answer:
Answer: Number of genes expressed in a tissue (in humans)
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
poisonAlien
★ 3.2k
5
votes
1
reply
1.9k
views
Answer:
A: Is there any better method to find significant SNVs ?
9.7 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
5.2k
views
Answer:
A: Bam to nucleotide frequencies
9.7 years ago by
poisonAlien
★ 3.2k
2
votes
1
reply
8.0k
views
Answer:
Answer: Error while converting SYMBOLS to ENTREZID - Bioconductor
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
poisonAlien
★ 3.2k
5
votes
1
reply
19k
views
Answer:
Answer: How to convert Illumina probe expression data into gene expression data?
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
poisonAlien
★ 3.2k
4
votes
0
replies
13k
views
Answer:
A: convert bed filr to fasta file
9.7 years ago by
poisonAlien
★ 3.2k
1
vote
1
reply
11k
views
Answer:
Answer: problems with MAF for MutSigCV (vcf2maf)
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
poisonAlien
★ 3.2k
0
votes
1
reply
2.5k
views
Answer:
A: what is the meaming of "FATAL ERROR:No MM probe for probe with id" using affymet
9.8 years ago by
poisonAlien
★ 3.2k
0
votes
1
reply
3.1k
views
Answer:
A: varscan copynumber producing highly variable data
9.8 years ago by
poisonAlien
★ 3.2k
0
votes
0
replies
9.8k
views
Answer:
A: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
9.8 years ago by
poisonAlien
★ 3.2k
3
votes
1
reply
8.4k
views
Answer:
Answer: difficulty with opening Affymetrix cel files
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
poisonAlien
★ 3.2k
104 results • Page
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