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17
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14
replies
6.2k
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Tool: trackplot: Fast and minimal dependency standalone R script to generate IGV style locus tracks from bigWig files
ChIP-Seq bigwigs igv R visualization Tool
updated 18 months ago by ▴ 10 • written 2.2 years ago by ★ 3.1k
2
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0
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1.5k
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Answer: Answer: What are some major historic shifts in bioinformatic methodologies?
22 months ago by poisonAlien ★ 3.1k
0
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2
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5.1k
views
Benefits of 150 bp reads over 100 bp reads in RNA-seq
RNA-Seq splicing hiseq4k
updated 2.2 years ago by 20 • written 6.9 years ago by ★ 3.1k
0
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1
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6.2k
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Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
2.2 years ago by poisonAlien ★ 3.1k
0
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0
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6.2k
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Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
2.2 years ago by poisonAlien ★ 3.1k
0
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0
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6.2k
views
Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
2.2 years ago by poisonAlien ★ 3.1k
1
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2
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6.2k
views
Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
2.2 years ago by poisonAlien ★ 3.1k
0
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1
reply
6.2k
views
Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
2.2 years ago by poisonAlien ★ 3.1k
1
vote
1
reply
8.6k
views
Answer: A: ABSOLUTE to estimate tumour purity from WES data
updated 3.1 years ago by 37k • written 7.0 years ago by ★ 3.1k
0
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0
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2.0k
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Answer: A: Is there an software can handle CNV analysis without control for WES data?
updated 3.1 years ago by 37k • written 8.7 years ago by ★ 3.1k
0
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1
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7.5k
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Comment: C: following Kallisto with DESeq2 using tximport package
updated 3.1 years ago by 37k • written 7.0 years ago by ★ 3.1k
0
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0
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6.9k
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Answer: A: micoarray analysis (affamytrix) software or tools
updated 3.1 years ago by 37k • written 8.7 years ago by ★ 3.1k
2
votes
1
reply
38k
views
Answer: A: How to extract unique mapped results from Bowtie2 bam results?
updated 3.1 years ago by 37k • written 8.7 years ago by ★ 3.1k
0
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1
reply
2.4k
views
Comment: C: cn.mops error - Help !
updated 3.1 years ago by 37k • written 8.8 years ago by ★ 3.1k
0
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1
reply
5.6k
views
Comment: C: What is mutation calling in exome sequencing?
updated 3.1 years ago by 37k • written 7.1 years ago by ★ 3.1k
0
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1
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2.2k
views
Comment: C: Genome assembly is hard: the tardigrade genome.
updated 3.2 years ago by 37k • written 7.1 years ago by ★ 3.1k
0
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0
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2.6k
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Comment: C: calling variants between two strains
updated 3.2 years ago by 37k • written 7.2 years ago by ★ 3.1k
1
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1
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2.6k
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Answer: A: calling variants between two strains
updated 3.2 years ago by 37k • written 7.2 years ago by ★ 3.1k
0
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2
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9.6k
views
Comment: C: How to use MutSigCV correctly
updated 3.2 years ago by 37k • written 7.3 years ago by ★ 3.1k
0
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2
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9.6k
views
Comment: C: How to use MutSigCV correctly
updated 3.2 years ago by 37k • written 7.3 years ago by ★ 3.1k
0
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1
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9.6k
views
Comment: C: How to use MutSigCV correctly
updated 3.2 years ago by 37k • written 7.3 years ago by ★ 3.1k
4
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0
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6.8k
views
Answer: Answer: Is there a good manual/tutorial for TreeView?
updated 14 months ago by 37k • written 8.5 years ago by ★ 3.1k
3
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1
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6.1k
views
Answer: A: How to use Samtools to remove reads whose mate does not map as expected
updated 3.3 years ago by 37k • written 8.6 years ago by ★ 3.1k
3
votes
1
reply
5.7k
views
Answer: A: Comparing vcf with dbSNP
updated 3.3 years ago by 37k • written 8.6 years ago by ★ 3.1k
2
votes
0
replies
6.5k
views
Answer: A: Customize IGV coverage track in R
updated 3.3 years ago by 37k • written 8.7 years ago by ★ 3.1k
4
votes
2
replies
9.6k
views
Answer: A: How to use MutSigCV correctly
updated 4.3 years ago by 37k • written 7.3 years ago by ★ 3.1k
0
votes
0
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1.3k
views
Comment: C: Recommendation for statistics book
4.4 years ago by poisonAlien ★ 3.1k
5
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1
reply
1.6k
views
Answer: A: clonal populations in cancer samples
4.4 years ago by poisonAlien ★ 3.1k
2
votes
0
replies
13k
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Comment: C: The comparison between HISAT2 and Tophat2
updated 4.4 years ago by 37k • written 7.0 years ago by ★ 3.1k
0
votes
0
replies
1.4k
views
Answer: A: Finding out if non-coding transcripts from CPAT are tissue specific?
updated 4.4 years ago by 37k • written 7.0 years ago by ★ 3.1k
3
votes
0
replies
5.9k
views
Answer: A: R phangorn phylogenetic analysis from somatic mutations' binary table
updated 4.4 years ago by 37k • written 7.0 years ago by ★ 3.1k
0
votes
1
reply
1.4k
views
Answer: C: normalisation method for microarray
updated 4.4 years ago by 37k • written 7.0 years ago by ★ 3.1k
54
votes
24
replies
3.1k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows News
written 6.9 years ago by ★ 3.1k
1
vote
1
reply
10k
views
Comment: C: TMB Tumor Mutation Burden
5.0 years ago by poisonAlien ★ 3.1k
0
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0
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1.3k
views
Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
5.0 years ago by poisonAlien ★ 3.1k
0
votes
0
replies
1.3k
views
Comment: C: detecting mutations in cancer samples belonging to the same cancer type
5.0 years ago by poisonAlien ★ 3.1k
0
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1
reply
1.3k
views
Comment: C: detecting mutations in cancer samples belonging to the same cancer type
5.0 years ago by poisonAlien ★ 3.1k
0
votes
0
replies
2.3k
views
Answer: A: Software to analyse mutational signatures other than DeconstructSigs R package
5.1 years ago by poisonAlien ★ 3.1k
0
votes
1
reply
4.2k
views
Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
5.1 years ago by poisonAlien ★ 3.1k
0
votes
1
reply
1.6k
views
Comment: C: Driver gene detection with SomInaClust
5.2 years ago by poisonAlien ★ 3.1k
0
votes
1
reply
1.8k
views
Answer: A: how to decide whether a mutation is driver for a specific cell line
5.3 years ago by poisonAlien ★ 3.1k
2
votes
0
replies
6.1k
views
Answer: A: Annotation of ID from TCGA gene expression data
5.4 years ago by poisonAlien ★ 3.1k
1
vote
1
reply
3.2k
views
Comment: C: Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
5.4 years ago by poisonAlien ★ 3.1k
2
votes
0
replies
1.4k
views
Answer: A: Tools to identify the non-coding RNAs
5.5 years ago by poisonAlien ★ 3.1k
1
vote
0
replies
1.9k
views
Job: Bioinformatician - Cancer Genomics, Cancer Science Institute of Singapore, NUS, Singapore.
job wxs RNA-Seq R ChIP-Seq Job
5.5 years ago by poisonAlien ★ 3.1k
0
votes
0
replies
1.9k
views
Comment: C: Why copy number variations of TCGA is so high
5.5 years ago by poisonAlien ★ 3.1k
0
votes
1
reply
1.9k
views
Comment: C: Why copy number variations of TCGA is so high
5.5 years ago by poisonAlien ★ 3.1k
0
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0
replies
3.6k
views
Comment: C: ABSOLUTE MAF error
5.5 years ago by poisonAlien ★ 3.1k
0
votes
1
reply
3.6k
views
Comment: C: ABSOLUTE MAF error
5.5 years ago by poisonAlien ★ 3.1k
1
vote
1
reply
1.6k
views
Comment: C: Germline mutation list in Lung TCGA data
5.5 years ago by poisonAlien ★ 3.1k
308 results • Page 1 of 7
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