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Use of BAMs mapped to assembly of all reads in metagenome binning.
binning genome metagenome
3.6 years ago by robert.murphy ▴ 80
1
vote
7
replies
1.1k
views
Is there a tool for creating publication quallity phylogenetic tree with metadata associated with each leaf
alignment
updated 3.8 years ago by 3.2k • written 3.8 years ago by ▴ 80
4
votes
4
replies
2.5k
views
Scanpy vs DeSeq for single cell RNASeq DE gene analysis
RNA-Seq
updated 2.4 years ago by ▴ 10 • written 4.2 years ago by ▴ 80
0
votes
3
replies
556
views
Comparing two sets of 16s sequences to identify any identicle (within 97%) sequences
alignment genome
updated 4.0 years ago by ★ 27k • written 4.0 years ago by ▴ 80
5
votes
2
replies
2.3k
views
BUSCO vs CheckM, which is best for determining bacterial genome completness.
genome
updated 4.0 years ago by ★ 27k • written 4.0 years ago by ▴ 80
1
vote
6
replies
4.3k
views
How to convert gff to gbk format. I have the assembled fasta also
genome
updated 4.0 years ago by 20 • written 4.2 years ago by ▴ 80
0
votes
1
reply
848
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Can I do a GO enrichment analysis with bacterial species abundance instead of expression values?
genome
updated 4.1 years ago by 20 • written 4.3 years ago by ▴ 80
0
votes
1
reply
838
views
Convert gene sequence into protein sequence them HMM
alignment genome
updated 4.2 years ago by ▴ 1000 • written 4.2 years ago by ▴ 80
1
vote
11
replies
1.4k
views
Can I use deseq on non transcriptome data?
genome
4.2 years ago by robert.murphy ▴ 80
4
votes
4
replies
907
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Cross referencing biosynthetic gene clusters in metagenome, best way to do this?
genome
updated 4.2 years ago by ★ 27k • written 4.3 years ago by ▴ 80
0
votes
13
replies
1.0k
views
Blastn on paired end barcoding sequences
sequencing genome
4.3 years ago by robert.murphy ▴ 80
2
votes
3
replies
922
views
Question: Best approach to bacterial hybrid genome assembly
Assembly genome hybrid assembly
4.4 years ago by robert.murphy ▴ 80
8
votes
8
replies
7.2k
views
What is the difference between paired end reads and overlapping reads, and then why merge overlapping reads before assembly?
Assembly genome sequencing
updated 2.3 years ago by 15k • written 4.4 years ago by ▴ 80
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