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1
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0
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432
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Comment: Comment: Graphic representation of distance between samples
4 months ago by robert.murphy ▴ 80
0
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1
reply
691
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Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
10 months ago by robert.murphy ▴ 80
6
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7
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691
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Genes looking differential abundant are not accoring to DESeq2
Deseq2 R
updated 10 months ago by 97k • written 11 months ago by ▴ 80
0
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1
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691
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Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
11 months ago by robert.murphy ▴ 80
0
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0
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691
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Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
11 months ago by robert.murphy ▴ 80
6
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10
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12k
views
6 follow
Deseq error : ncol(countData) == nrow(colData) is not TRUE
genome
written 3.2 years ago by ▴ 80
1
vote
1
reply
289
views
Circos.heatmap not displaying zero values in R
visualisation R
12 months ago by robert.murphy ▴ 80
1
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0
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289
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Answer: Answer: Circos.heatmap not displaying zero values in R
12 months ago by robert.murphy ▴ 80
0
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0
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374
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Comment: Comment: DESeq2 on metagenomic gene abundance data, should I normalize for total sample d
13 months ago by robert.murphy ▴ 80
0
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2
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374
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DESeq2 on metagenomic gene abundance data, should I normalize for total sample depth?
Deseq2 metagenome R
13 months ago by robert.murphy ▴ 80
0
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0
replies
238
views
EnhancedVolcano selectLab() for custom labels but only those above Pvalue threshold
EnhancedVolcano Deseq2 R
13 months ago by robert.murphy ▴ 80
0
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1
reply
16k
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Comment: Comment: Error: Every gene contains at least one zero, cannot compute log geometric means
14 months ago by robert.murphy ▴ 80
4
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3
replies
718
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Can an enzyme have multiple EC numbers?
hotpep expasy enzyme
updated 15 months ago by 14k • written 15 months ago by ▴ 80
0
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0
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718
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Comment: Comment: Can an enzyme have multiple EC numbers?
15 months ago by robert.murphy ▴ 80
0
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0
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898
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Comment: Comment: What is the best tool to recover nitrogen cycling genes from an annotated assemb
15 months ago by robert.murphy ▴ 80
0
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1
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898
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Comment: Comment: What is the best tool to recover nitrogen cycling genes from an annotated assemb
15 months ago by robert.murphy ▴ 80
0
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1
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898
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Comment: Comment: What is the best tool to recover nitrogen cycling genes from an annotated assemb
15 months ago by robert.murphy ▴ 80
0
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6
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898
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What is the best tool to recover nitrogen cycling genes from an annotated assembly?
annotation
15 months ago by robert.murphy ▴ 80
0
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0
replies
268
views
How to calculate mapping rate per contig of an assembly scaled by contig length?
assembly alignment metagenome
15 months ago by robert.murphy ▴ 80
0
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0
replies
363
views
How to reintroduce sample divisions to a metagenomic co-assembly, what are the best practices?
coverage assembly metagenomic
15 months ago by robert.murphy ▴ 80
0
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0
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294
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Is there any reason to discard singletons after de-hosting metagenomic reads?
alignment metagenome
16 months ago by robert.murphy ▴ 80
0
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0
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568
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Comment: Comment: paired reads have different names BWA MEM after samtools bam > fastq
17 months ago by robert.murphy ▴ 80
0
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2
replies
568
views
paired reads have different names BWA MEM after samtools bam > fastq
alignment
17 months ago by robert.murphy ▴ 80
0
votes
0
replies
833
views
Comment: Comment: How to get summary statistics out of bbduk.sh ?
17 months ago by robert.murphy ▴ 80
0
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0
replies
1.0k
views
Comment: Comment: Should you normalization metagenomic data
17 months ago by robert.murphy ▴ 80
0
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1
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833
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Comment: Comment: How to get summary statistics out of bbduk.sh ?
17 months ago by robert.murphy ▴ 80
1
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4
replies
833
views
How to get summary statistics out of bbduk.sh ?
quallity sequencing control
17 months ago by robert.murphy ▴ 80
0
votes
1
reply
1.0k
views
Comment: Comment: Should you normalization metagenomic data
17 months ago by robert.murphy ▴ 80
0
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1
reply
1.0k
views
Comment: Comment: Should you normalization metagenomic data
17 months ago by robert.murphy ▴ 80
5
votes
6
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1.0k
views
Should you normalization metagenomic data
metagenomic coverage assembly
17 months ago by robert.murphy ▴ 80
0
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0
replies
320
views
K-mer coverage of metgenomic data, what is the uper limit of K?
metagenomic coverage
17 months ago by robert.murphy ▴ 80
0
votes
0
replies
1.3k
views
Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
17 months ago by robert.murphy ▴ 80
0
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1
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1.3k
views
Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
17 months ago by robert.murphy ▴ 80
0
votes
1
reply
1.3k
views
Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
17 months ago by robert.murphy ▴ 80
0
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1
reply
1.3k
views
Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
17 months ago by robert.murphy ▴ 80
0
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8
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1.3k
views
Mapping contigs back to samples from co-assembled metagenome.
coassembly
17 months ago by robert.murphy ▴ 80
0
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1
reply
677
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Comment: Comment: Metagenomic assembly, removing redundant contigs.
17 months ago by robert.murphy ▴ 80
0
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3
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677
views
Metagenomic assembly, removing redundant contigs.
metagenome assembly
updated 17 months ago by 11k • written 17 months ago by ▴ 80
0
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0
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21k
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Comment: Comment: Why Is Maximum Likelihood Thought To Be The Best Way To Build Phylogenetic Tree?
17 months ago by robert.murphy ▴ 80
0
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0
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300
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What would the assortativity of a putative mirobial interaction network tell you in an evological setting?
graphs 16S network
18 months ago by robert.murphy ▴ 80
0
votes
1
reply
819
views
Comment: Comment: Genome assembly, removal of conting below 300 bp?
18 months ago by robert.murphy ▴ 80
0
votes
1
reply
819
views
Comment: Comment: Genome assembly, removal of conting below 300 bp?
18 months ago by robert.murphy ▴ 80
2
votes
5
replies
819
views
Genome assembly, removal of conting below 300 bp?
assembly
updated 18 months ago by 14k • written 18 months ago by ▴ 80
0
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1
reply
2.6k
views
Comment: Comment: What is the correct syntax for BioPythons SeqIO.parse()
18 months ago by robert.murphy ▴ 80
4
votes
3
replies
2.6k
views
What is the correct syntax for BioPythons SeqIO.parse()
assembly biopython
updated 18 months ago by 7.7k • written 18 months ago by ▴ 80
0
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0
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1.0k
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Comment: Comment: Whole genome species clustering
18 months ago by robert.murphy ▴ 80
0
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2
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507
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Comment: Comment: How to get from annotated sequences to UniProt IDs
20 months ago by robert.murphy ▴ 80
1
vote
4
replies
507
views
How to get from annotated sequences to UniProt IDs
annotation
updated 20 months ago by ★ 1.1k • written 20 months ago by ▴ 80
0
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0
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542
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Comment: Comment: Combining distance matricies between multiple aligned genes into final distance
22 months ago by robert.murphy ▴ 80
0
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0
replies
542
views
Comment: Comment: Combining distance matricies between multiple aligned genes into final distance
22 months ago by robert.murphy ▴ 80
181 results • Page 1 of 4
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