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1
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507
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Comment:
Comment: combine VCF from diploid reference/haplotypes for the same sample
17 days ago by
cmdcolin
★ 4.3k
0
votes
0
replies
3.8k
views
Comment:
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
28 days ago by
cmdcolin
★ 4.3k
0
votes
1
reply
3.8k
views
Comment:
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
29 days ago by
cmdcolin
★ 4.3k
1
vote
0
replies
3.7k
views
Comment:
Comment: best practice for diploid variant calling
8 weeks ago by
cmdcolin
★ 4.3k
0
votes
1
reply
3.7k
views
Comment:
Comment: best practice for diploid variant calling
8 weeks ago by
cmdcolin
★ 4.3k
2
votes
0
replies
12k
views
Answer:
Answer: RNA-Seq - Strand-specific coverage for a paired library
9 weeks ago by
cmdcolin
★ 4.3k
0
votes
0
replies
2.9k
views
Comment:
Comment: Splitting VCF using phase information
10 weeks ago by
cmdcolin
★ 4.3k
1
vote
1
reply
2.9k
views
Comment:
Comment: Splitting VCF using phase information
10 weeks ago by
cmdcolin
★ 4.3k
1
vote
0
replies
3.0k
views
Answer:
Answer: Estimating copy number of heterologous genes from WGS data in Yarrowia lipolytic
10 weeks ago by
cmdcolin
★ 4.3k
0
votes
1
reply
640
views
Comment:
Comment: dbSNP: left-shift vs right-shift of indels
12 weeks ago by
cmdcolin
★ 4.3k
0
votes
0
replies
529
views
Comment:
Comment: chromosome ideogram
3 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
450
views
Comment:
Comment: Rust in Bioinformatics monthly newsletter
3 months ago by
cmdcolin
★ 4.3k
1
vote
2
replies
800
views
Comment:
Comment: Splitting chromosomes into contigs within BAM and GTF files
3 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
711
views
Answer:
Answer: asking for optimized bash scripting
3 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
1.0k
views
Comment:
Comment: Assistance running population specific hapibd
3 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
5.2k
views
Answer:
Answer: Extract transcript fasta using gff
3 months ago by
cmdcolin
★ 4.3k
0
votes
1
reply
3.4k
views
Comment:
Comment: Which Reference Hg38 or T2T?? Both??
3 months ago by
cmdcolin
★ 4.3k
1
vote
2
replies
3.4k
views
Answer:
Answer: Which Reference Hg38 or T2T?? Both??
3 months ago by
cmdcolin
★ 4.3k
8
votes
12
replies
3.7k
views
Map genome positions onto protein coordinates?
pdb
protein
variant
updated 4 months ago by
fileyfood
▴ 20 • written 2.0 years ago by
cmdcolin
★ 4.3k
1
vote
0
replies
1.3k
views
Answer:
Answer: Phased haplotype using WGS data from Nebula Genomics and GATK
5 months ago by
cmdcolin
★ 4.3k
0
votes
1
reply
1.0k
views
Comment:
Comment: finding gene sequence from WGS data
5 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
687
views
Comment:
Comment: Setaria Pan-Genome Variation: Unraveling the Story of Domestication
5 months ago by
cmdcolin
★ 4.3k
1
vote
2
replies
898
views
Comment:
Comment: variant calling chromosome-wise from WGS data
5 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
1.4k
views
Answer:
Answer: No variant in the Pseudoautosomal regions of gomad chrY ?
5 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
26k
views
Comment:
Comment: The Biostar Herald for Monday, May 05, 2025
5 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
670
views
Comment:
Comment: Interpreting a vcf file
6 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
969
views
Comment:
Comment: Visualise duplications and inversions
6 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
1.4k
views
Comment:
Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
6 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
2.3k
views
Answer:
Answer: Extract length of sample sequence from vcf
6 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
8.0k
views
Comment:
Comment: Convert bed12 to GFF
6 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
4.0k
views
Comment:
Comment: From GCA identifiers, download Genbank file format?
6 months ago by
cmdcolin
★ 4.3k
1
vote
1
reply
1.4k
views
Comment:
Comment: Coverage depth using samtools
7 months ago by
cmdcolin
★ 4.3k
2
votes
0
replies
796
views
Answer:
Answer: CNV detection
7 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
1.5k
views
Comment:
Comment: How to extract a multiple sequence alignment file from a CRAM file?
7 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
1.9k
views
Comment:
Comment: Find "phased segments" from trio VCF?
7 months ago by
cmdcolin
★ 4.3k
0
votes
1
reply
1.9k
views
Comment:
Comment: Find "phased segments" from trio VCF?
7 months ago by
cmdcolin
★ 4.3k
2
votes
9
replies
1.9k
views
Find "phased segments" from trio VCF?
phased
vcf
genotyping
variants
phasing
7 months ago by
cmdcolin
★ 4.3k
0
votes
1
reply
1.9k
views
Answer:
Answer: Find "phased segments" from trio VCF?
7 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
1.8k
views
Comment:
Comment: Manual conversion of VCF genotypes to nucleotide sequence
8 months ago by
cmdcolin
★ 4.3k
1
vote
1
reply
1.8k
views
Answer:
Answer: Manual conversion of VCF genotypes to nucleotide sequence
8 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
3.9k
views
Comment:
Comment: sliding windows over genome
8 months ago by
cmdcolin
★ 4.3k
1
vote
1
reply
1.8k
views
Comment:
Comment: Manual conversion of VCF genotypes to nucleotide sequence
8 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
4.6k
views
Comment:
Comment: Bedmethyl file format
8 months ago by
cmdcolin
★ 4.3k
0
votes
1
reply
4.6k
views
Comment:
Comment: Bedmethyl file format
8 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
825
views
Answer:
Answer: Genomes with existing T2T assemblies?
8 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
830
views
Comment:
Comment: How to convert CIGAR string to VCF?
8 months ago by
cmdcolin
★ 4.3k
1
vote
0
replies
698
views
Comment:
Comment: GRCh38 reference paths in human pangenome
8 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
2.9k
views
Answer:
Answer: How to completely align chromosomes/scaffolds from de novo genome assemblies usi
8 months ago by
cmdcolin
★ 4.3k
0
votes
0
replies
1.9k
views
Comment:
Comment: Find "phased segments" from trio VCF?
8 months ago by
cmdcolin
★ 4.3k
0
votes
1
reply
1.9k
views
Comment:
Comment: Find "phased segments" from trio VCF?
8 months ago by
cmdcolin
★ 4.3k
603 results • Page
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