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408
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Comment: Comment: identify transposable elements in iso-seq data
2 days ago by cmdcolin ★ 4.0k
3
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1
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463
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Comment: Comment: The Biostar Herald for Monday, November 04, 2024
4 days ago by cmdcolin ★ 4.0k
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1
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567
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Comment: Comment: Genome Assembly Verification, Chimeric contigs
16 days ago by cmdcolin ★ 4.0k
3
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0
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225
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Answer: Answer: Key-value pairs at the end of lines of gaf/paf files
16 days ago by cmdcolin ★ 4.0k
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1
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526
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Comment: Comment: CpG coordinates information
7 weeks ago by cmdcolin ★ 4.0k
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1
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526
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Answer: Answer: CpG coordinates information
8 weeks ago by cmdcolin ★ 4.0k
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0
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604
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Comment: Comment: How to check coverage in bam file?
10 weeks ago by cmdcolin ★ 4.0k
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0
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618
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Comment: Comment: Extracting supplementary reads from bam file
11 weeks ago by cmdcolin ★ 4.0k
3
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1
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618
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Answer: Answer: Extracting supplementary reads from bam file
10 weeks ago by cmdcolin ★ 4.0k
1
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1
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6.9k
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Comment: Comment: Coverage plot of a complete genome
11 weeks ago by cmdcolin ★ 4.0k
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0
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46k
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Comment: Comment: Get chromosome sizes from fasta file
12 weeks ago by cmdcolin ★ 4.0k
1
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1
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596
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Comment: Comment: how to effectively pipe chromap into samtools view
12 weeks ago by cmdcolin ★ 4.0k
2
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1
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596
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Answer: Answer: how to effectively pipe into samtools view
12 weeks ago by cmdcolin ★ 4.0k
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0
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4.0k
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Answer: Answer: Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
4 months ago by cmdcolin ★ 4.0k
0
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0
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4.0k
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Comment: Comment: Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
4 months ago by cmdcolin ★ 4.0k
0
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0
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204
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Extract alignment between two samples from a GFA?
graph-genome vg cactus
updated 4 months ago by 44k • written 4 months ago by ★ 4.0k
0
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0
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2.3k
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Comment: Comment: Realigning BAM files to new reference
4 months ago by cmdcolin ★ 4.0k
0
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0
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887
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
4 months ago by cmdcolin ★ 4.0k
0
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1
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887
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
4 months ago by cmdcolin ★ 4.0k
1
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1
reply
887
views
Answer: Answer: Why is UCSC lift over failing to convert a specific position?
4 months ago by cmdcolin ★ 4.0k
1
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1
reply
596
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Comment: Comment: Is T2T genome a "alternate assembly"
4 months ago by cmdcolin ★ 4.0k
0
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1
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482
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Comment: Comment: circlize R package to plot ecDNA
4 months ago by cmdcolin ★ 4.0k
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1
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482
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Comment: Comment: circlize R package to plot ecDNA
4 months ago by cmdcolin ★ 4.0k
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0
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481
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Comment: Comment: Genomic coordinates in the BioNano VCF
5 months ago by cmdcolin ★ 4.0k
1
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1
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481
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Answer: Answer: Genomic coordinates in the BioNano VCF
5 months ago by cmdcolin ★ 4.0k
0
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0
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508
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Comment: Comment: Minimap2 chimeric reads
5 months ago by cmdcolin ★ 4.0k
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0
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495
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Comment: Comment: Tools for chromosomal aneuploidy detection
5 months ago by cmdcolin ★ 4.0k
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0
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15k
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Comment: Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
6 months ago by cmdcolin ★ 4.0k
1
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0
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649
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Comment: Comment: Load a full GFF3 into annotation track using arrow (Apollo)
6 months ago by cmdcolin ★ 4.0k
1
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0
replies
563
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Comment: Comment: Best genome browser for manual curation of gene structure(s)?
7 months ago by cmdcolin ★ 4.0k
3
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1
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563
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Answer: Answer: Best genome browser for manual curation of gene structure(s)?
7 months ago by cmdcolin ★ 4.0k
0
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1
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774
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Answer: Answer: Is it possible to set different tracks to the same scale in JBrowse
7 months ago by cmdcolin ★ 4.0k
0
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0
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1.0k
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Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
0
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1
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1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
1
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0
replies
410
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Comment: Comment: Forgot the web site with comparison of NGS platforms
7 months ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
0
votes
1
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543
views
Comment: Comment: comparing VCF files
7 months ago by cmdcolin ★ 4.0k
1
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1
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2.3k
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Comment: Comment: How to calculate coverage of Nanopore long read data?
8 months ago by cmdcolin ★ 4.0k
2
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0
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490
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Answer: Answer: gene alignment (microsynteny)
8 months ago by cmdcolin ★ 4.0k
0
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1
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1.0k
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Answer: Answer: hg38 goldenPath cpgIsland is down?
9 months ago by cmdcolin ★ 4.0k
1
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1
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399
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Comment: Comment: How can I view the information in an alternative allele?
9 months ago by cmdcolin ★ 4.0k
2
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0
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532
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Answer: Answer: Impossible gene fusion annotations
9 months ago by cmdcolin ★ 4.0k
0
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0
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1.1k
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Comment: Comment: How to visualize multiple bacterial genomes with circos?
9 months ago by cmdcolin ★ 4.0k
0
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1
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728
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Comment: Comment: Querying nr_clustered database using BLAST REST API?
9 months ago by cmdcolin ★ 4.0k
0
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1
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728
views
Comment: Comment: Querying nr_clustered database using BLAST REST API?
9 months ago by cmdcolin ★ 4.0k
1
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5
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728
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Querying nr_clustered database using BLAST REST API?
blast clustered
updated 9 months ago by 147k • written 9 months ago by ★ 4.0k
0
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0
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3.1k
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Comment: Comment: How to get RID from blast rest api url using php
9 months ago by cmdcolin ★ 4.0k
0
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0
replies
791
views
Answer: Answer: Bacterial Synteny Tools
9 months ago by cmdcolin ★ 4.0k
538 results • Page 1 of 11
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