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152
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Comment: Comment: replicate SyRi/plotsr output plot in R
12 hours ago by cmdcolin ★ 4.4k
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152
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Answer: Answer: replicate SyRi/plotsr output plot in R
13 hours ago by cmdcolin ★ 4.4k
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0
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512
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Comment: Comment: combine VCF from diploid reference/haplotypes for the same sample
19 days ago by cmdcolin ★ 4.4k
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3.8k
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Comment: Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
29 days ago by cmdcolin ★ 4.4k
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1
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3.8k
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Comment: Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
4 weeks ago by cmdcolin ★ 4.4k
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0
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3.7k
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Comment: Comment: best practice for diploid variant calling
8 weeks ago by cmdcolin ★ 4.4k
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1
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3.7k
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Comment: Comment: best practice for diploid variant calling
8 weeks ago by cmdcolin ★ 4.4k
2
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0
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12k
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Answer: Answer: RNA-Seq - Strand-specific coverage for a paired library
9 weeks ago by cmdcolin ★ 4.4k
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0
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2.9k
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Comment: Comment: Splitting VCF using phase information
10 weeks ago by cmdcolin ★ 4.4k
1
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1
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2.9k
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Comment: Comment: Splitting VCF using phase information
11 weeks ago by cmdcolin ★ 4.4k
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3.0k
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Answer: Answer: Estimating copy number of heterologous genes from WGS data in Yarrowia lipolytic
11 weeks ago by cmdcolin ★ 4.4k
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1
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646
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Comment: Comment: dbSNP: left-shift vs right-shift of indels
3 months ago by cmdcolin ★ 4.4k
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0
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534
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Comment: Comment: chromosome ideogram
3 months ago by cmdcolin ★ 4.4k
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461
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Comment: Comment: Rust in Bioinformatics monthly newsletter
3 months ago by cmdcolin ★ 4.4k
1
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2
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811
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Comment: Comment: Splitting chromosomes into contigs within BAM and GTF files
3 months ago by cmdcolin ★ 4.4k
1
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0
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722
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Answer: Answer: asking for optimized bash scripting
3 months ago by cmdcolin ★ 4.4k
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0
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1.0k
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Comment: Comment: Assistance running population specific hapibd
3 months ago by cmdcolin ★ 4.4k
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0
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5.2k
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Answer: Answer: Extract transcript fasta using gff
3 months ago by cmdcolin ★ 4.4k
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1
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3.4k
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Comment: Comment: Which Reference Hg38 or T2T?? Both??
3 months ago by cmdcolin ★ 4.4k
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2
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3.4k
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Answer: Answer: Which Reference Hg38 or T2T?? Both??
3 months ago by cmdcolin ★ 4.4k
8
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12
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3.7k
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Map genome positions onto protein coordinates?
pdb protein variant
updated 4 months ago by ▴ 20 • written 2.0 years ago by ★ 4.4k
1
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0
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1.3k
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Answer: Answer: Phased haplotype using WGS data from Nebula Genomics and GATK
5 months ago by cmdcolin ★ 4.4k
0
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1
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1.0k
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Comment: Comment: finding gene sequence from WGS data
5 months ago by cmdcolin ★ 4.4k
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0
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696
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Comment: Comment: Setaria Pan-Genome Variation: Unraveling the Story of Domestication
5 months ago by cmdcolin ★ 4.4k
1
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2
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905
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Comment: Comment: variant calling chromosome-wise from WGS data
5 months ago by cmdcolin ★ 4.4k
1
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0
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1.4k
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Answer: Answer: No variant in the Pseudoautosomal regions of gomad chrY ?
5 months ago by cmdcolin ★ 4.4k
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0
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26k
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Comment: Comment: The Biostar Herald for Monday, May 05, 2025
5 months ago by cmdcolin ★ 4.4k
0
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0
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672
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Comment: Comment: Interpreting a vcf file
6 months ago by cmdcolin ★ 4.4k
1
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0
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975
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Comment: Comment: Visualise duplications and inversions
6 months ago by cmdcolin ★ 4.4k
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0
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1.4k
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Comment: Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
6 months ago by cmdcolin ★ 4.4k
0
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0
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2.3k
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Answer: Answer: Extract length of sample sequence from vcf
6 months ago by cmdcolin ★ 4.4k
0
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0
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8.0k
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Comment: Comment: Convert bed12 to GFF
6 months ago by cmdcolin ★ 4.4k
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0
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4.0k
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Comment: Comment: From GCA identifiers, download Genbank file format?
6 months ago by cmdcolin ★ 4.4k
1
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1
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1.5k
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Comment: Comment: Coverage depth using samtools
7 months ago by cmdcolin ★ 4.4k
2
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0
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802
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Answer: Answer: CNV detection
7 months ago by cmdcolin ★ 4.4k
1
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0
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1.5k
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Comment: Comment: How to extract a multiple sequence alignment file from a CRAM file?
7 months ago by cmdcolin ★ 4.4k
0
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0
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1.9k
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Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.4k
0
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1
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1.9k
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Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.4k
2
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9
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1.9k
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Find "phased segments" from trio VCF?
phased vcf genotyping variants phasing
7 months ago by cmdcolin ★ 4.4k
0
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1
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1.9k
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Answer: Answer: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.4k
0
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0
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1.8k
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
8 months ago by cmdcolin ★ 4.4k
1
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1
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1.8k
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Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
8 months ago by cmdcolin ★ 4.4k
0
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0
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3.9k
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Comment: Comment: sliding windows over genome
8 months ago by cmdcolin ★ 4.4k
1
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1
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1.8k
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
8 months ago by cmdcolin ★ 4.4k
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0
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4.6k
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Comment: Comment: Bedmethyl file format
8 months ago by cmdcolin ★ 4.4k
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1
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4.6k
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Comment: Comment: Bedmethyl file format
8 months ago by cmdcolin ★ 4.4k
1
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0
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833
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Answer: Answer: Genomes with existing T2T assemblies?
8 months ago by cmdcolin ★ 4.4k
1
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0
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836
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Comment: Comment: How to convert CIGAR string to VCF?
8 months ago by cmdcolin ★ 4.4k
1
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0
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701
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Comment: Comment: GRCh38 reference paths in human pangenome
8 months ago by cmdcolin ★ 4.4k
0
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0
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3.0k
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Answer: Answer: How to completely align chromosomes/scaffolds from de novo genome assemblies usi
8 months ago by cmdcolin ★ 4.4k
605 results • Page 1 of 13
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