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Comment: Comment: best practice for diploid variant calling
11 days ago by cmdcolin ★ 4.3k
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1
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3.3k
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Comment: Comment: best practice for diploid variant calling
12 days ago by cmdcolin ★ 4.3k
2
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11k
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Answer: Answer: RNA-Seq - Strand-specific coverage for a paired library
23 days ago by cmdcolin ★ 4.3k
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2.8k
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Comment: Comment: Splitting VCF using phase information
27 days ago by cmdcolin ★ 4.3k
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1
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2.8k
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Comment: Comment: Splitting VCF using phase information
4 weeks ago by cmdcolin ★ 4.3k
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2.8k
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Answer: Answer: Estimating copy number of heterologous genes from WGS data in Yarrowia lipolytic
4 weeks ago by cmdcolin ★ 4.3k
0
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1
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554
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Comment: Comment: dbSNP: left-shift vs right-shift of indels
6 weeks ago by cmdcolin ★ 4.3k
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442
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Comment: Comment: chromosome ideogram
7 weeks ago by cmdcolin ★ 4.3k
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364
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Comment: Comment: Rust in Bioinformatics monthly newsletter
7 weeks ago by cmdcolin ★ 4.3k
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2
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668
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Comment: Comment: Splitting chromosomes into contigs within BAM and GTF files
8 weeks ago by cmdcolin ★ 4.3k
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0
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590
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Answer: Answer: asking for optimized bash scripting
8 weeks ago by cmdcolin ★ 4.3k
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0
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729
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Comment: Comment: Assistance running population specific hapibd
8 weeks ago by cmdcolin ★ 4.3k
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4.7k
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Answer: Answer: Extract transcript fasta using gff
9 weeks ago by cmdcolin ★ 4.3k
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1
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3.1k
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Comment: Comment: Which Reference Hg38 or T2T?? Both??
9 weeks ago by cmdcolin ★ 4.3k
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2
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3.1k
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Answer: Answer: Which Reference Hg38 or T2T?? Both??
9 weeks ago by cmdcolin ★ 4.3k
8
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12
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3.3k
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Map genome positions onto protein coordinates?
pdb protein variant
updated 3 months ago by ▴ 20 • written 23 months ago by ★ 4.3k
1
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0
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1.1k
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Answer: Answer: Phased haplotype using WGS data from Nebula Genomics and GATK
3 months ago by cmdcolin ★ 4.3k
0
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1
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894
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Comment: Comment: finding gene sequence from WGS data
3 months ago by cmdcolin ★ 4.3k
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0
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596
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Comment: Comment: Setaria Pan-Genome Variation: Unraveling the Story of Domestication
4 months ago by cmdcolin ★ 4.3k
1
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2
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738
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Comment: Comment: variant calling chromosome-wise from WGS data
4 months ago by cmdcolin ★ 4.3k
1
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0
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1.1k
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Answer: Answer: No variant in the Pseudoautosomal regions of gomad chrY ?
4 months ago by cmdcolin ★ 4.3k
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0
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15k
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Comment: Comment: The Biostar Herald for Monday, May 05, 2025
4 months ago by cmdcolin ★ 4.3k
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0
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589
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Comment: Comment: Interpreting a vcf file
4 months ago by cmdcolin ★ 4.3k
1
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0
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846
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Comment: Comment: Visualise duplications and inversions
4 months ago by cmdcolin ★ 4.3k
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0
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1.3k
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Comment: Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
5 months ago by cmdcolin ★ 4.3k
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0
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2.0k
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Answer: Answer: Extract length of sample sequence from vcf
5 months ago by cmdcolin ★ 4.3k
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0
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7.7k
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Comment: Comment: Convert bed12 to GFF
5 months ago by cmdcolin ★ 4.3k
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0
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3.5k
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Comment: Comment: From GCA identifiers, download Genbank file format?
5 months ago by cmdcolin ★ 4.3k
1
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1
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1.2k
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Comment: Comment: Coverage depth using samtools
5 months ago by cmdcolin ★ 4.3k
2
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0
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687
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Answer: Answer: CNV detection
6 months ago by cmdcolin ★ 4.3k
1
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0
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1.3k
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Comment: Comment: How to extract a multiple sequence alignment file from a CRAM file?
6 months ago by cmdcolin ★ 4.3k
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0
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1.6k
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Comment: Comment: Find "phased segments" from trio VCF?
6 months ago by cmdcolin ★ 4.3k
0
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1
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1.6k
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Comment: Comment: Find "phased segments" from trio VCF?
6 months ago by cmdcolin ★ 4.3k
2
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9
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1.6k
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Find "phased segments" from trio VCF?
phased vcf genotyping variants phasing
6 months ago by cmdcolin ★ 4.3k
0
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1
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1.6k
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Answer: Answer: Find "phased segments" from trio VCF?
6 months ago by cmdcolin ★ 4.3k
0
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0
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1.5k
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
6 months ago by cmdcolin ★ 4.3k
1
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1
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1.5k
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Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
6 months ago by cmdcolin ★ 4.3k
0
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0
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3.6k
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Comment: Comment: sliding windows over genome
6 months ago by cmdcolin ★ 4.3k
1
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1
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1.5k
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
6 months ago by cmdcolin ★ 4.3k
0
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0
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4.1k
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Comment: Comment: Bedmethyl file format
6 months ago by cmdcolin ★ 4.3k
0
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1
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4.1k
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Comment: Comment: Bedmethyl file format
6 months ago by cmdcolin ★ 4.3k
1
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0
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727
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Answer: Answer: Genomes with existing T2T assemblies?
6 months ago by cmdcolin ★ 4.3k
1
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0
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678
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Comment: Comment: How to convert CIGAR string to VCF?
6 months ago by cmdcolin ★ 4.3k
1
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0
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605
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Comment: Comment: GRCh38 reference paths in human pangenome
7 months ago by cmdcolin ★ 4.3k
0
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0
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2.3k
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Answer: Answer: How to completely align chromosomes/scaffolds from de novo genome assemblies usi
7 months ago by cmdcolin ★ 4.3k
0
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0
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1.6k
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Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.3k
0
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1
reply
1.6k
views
Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.3k
0
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0
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1.6k
views
Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.3k
0
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1
reply
1.6k
views
Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by cmdcolin ★ 4.3k
0
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0
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3.1k
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Comment: Comment: Locating IBD candidates with just VCF files
7 months ago by cmdcolin ★ 4.3k
600 results • Page 1 of 12
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