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1.1k
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Comment: Comment: Overlapping regions in bedGraph
7 months ago by cmdcolin ★ 4.3k
2
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0
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2.1k
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Answer: Answer: How to estimate and visualize haplotype blocks on a phased VCF/BCF
3 days ago by cmdcolin ★ 4.3k
0
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0
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948
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Comment: Comment: How can you interpret a phased VCF with no "phase set" field (PS)
7 months ago by cmdcolin ★ 4.3k
0
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1
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1.1k
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Answer: Answer: Check the normalizations available in a hic file?
7 months ago by cmdcolin ★ 4.3k
0
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1
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948
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Comment: Comment: How can you interpret a phased VCF with no "phase set" field (PS)
7 months ago by cmdcolin ★ 4.3k
0
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1
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948
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Comment: Comment: How can you interpret a phased VCF with no "phase set" field (PS)
7 months ago by cmdcolin ★ 4.3k
0
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3
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948
views
How can you interpret a phased VCF with no "phase set" field (PS)
variants vcf phasing genotyping
7 months ago by cmdcolin ★ 4.3k
1
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0
replies
1.2k
views
Answer: Answer: PanSN naming issue in pggb fastas
8 months ago by cmdcolin ★ 4.3k
0
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0
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875
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Comment: Comment: Optimal Method for Chain File Generation: BLAT vs Minimap2 and MAF2Chain vs axtC
9 months ago by cmdcolin ★ 4.3k
2
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0
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698
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Answer: Answer: Problem while replicating methylation predicting paper, looking for explanation
9 months ago by cmdcolin ★ 4.3k
0
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1
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1.2k
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
9 months ago by cmdcolin ★ 4.3k
0
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1
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2.0k
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Comment: Comment: Recapitulating a GenomeBrowser-style plot
9 months ago by cmdcolin ★ 4.3k
0
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0
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6.6k
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Comment: Comment: Conversion Of Alignment Files
10 months ago by cmdcolin ★ 4.3k
2
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0
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632
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Answer: Answer: Visualize and annotate protein domains within a genomic context, given complemen
10 months ago by cmdcolin ★ 4.3k
0
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1
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1.3k
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Comment: Comment: identify transposable elements in iso-seq data
10 months ago by cmdcolin ★ 4.3k
4
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1
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16k
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Comment: Comment: The Biostar Herald for Monday, November 04, 2024
10 months ago by cmdcolin ★ 4.3k
0
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1
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1.7k
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Comment: Comment: Genome Assembly Verification, Chimeric contigs
10 months ago by cmdcolin ★ 4.3k
3
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0
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619
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Answer: Answer: Key-value pairs at the end of lines of gaf/paf files
10 months ago by cmdcolin ★ 4.3k
0
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1
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1.2k
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Comment: Comment: CpG coordinates information
12 months ago by cmdcolin ★ 4.3k
0
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1
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1.2k
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Answer: Answer: CpG coordinates information
12 months ago by cmdcolin ★ 4.3k
0
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0
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1.8k
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Comment: Comment: How to check coverage in bam file?
12 months ago by cmdcolin ★ 4.3k
0
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0
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1.8k
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Comment: Comment: Extracting supplementary reads from bam file
12 months ago by cmdcolin ★ 4.3k
3
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1
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1.8k
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Answer: Answer: Extracting supplementary reads from bam file
12 months ago by cmdcolin ★ 4.3k
1
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1
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9.0k
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Comment: Comment: Coverage plot of a complete genome
13 months ago by cmdcolin ★ 4.3k
0
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0
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52k
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Comment: Comment: Get chromosome sizes from fasta file
13 months ago by cmdcolin ★ 4.3k
1
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1
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1.6k
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Comment: Comment: how to effectively pipe chromap into samtools view
13 months ago by cmdcolin ★ 4.3k
2
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1
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1.6k
views
Answer: Answer: how to effectively pipe into samtools view
13 months ago by cmdcolin ★ 4.3k
0
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0
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4.8k
views
Answer: Answer: Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
14 months ago by cmdcolin ★ 4.3k
0
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0
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4.8k
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Comment: Comment: Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
14 months ago by cmdcolin ★ 4.3k
0
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0
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468
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Extract alignment between two samples from a GFA?
graph-genome vg cactus
updated 14 months ago by 45k • written 14 months ago by ★ 4.3k
0
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0
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3.6k
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Comment: Comment: Realigning BAM files to new reference
14 months ago by cmdcolin ★ 4.3k
0
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0
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2.5k
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
5 weeks ago by cmdcolin ★ 4.3k
0
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1
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2.5k
views
Comment: Comment: Why is UCSC lift over failing to convert a specific position?
15 months ago by cmdcolin ★ 4.3k
1
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1
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2.5k
views
Answer: Answer: Why is UCSC lift over failing to convert a specific position?
15 months ago by cmdcolin ★ 4.3k
1
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1
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1.5k
views
Comment: Comment: Is T2T genome a "alternate assembly"
15 months ago by cmdcolin ★ 4.3k
0
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1
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1.1k
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Comment: Comment: circlize R package to plot ecDNA
15 months ago by cmdcolin ★ 4.3k
0
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1
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1.1k
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Comment: Comment: circlize R package to plot ecDNA
15 months ago by cmdcolin ★ 4.3k
0
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0
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868
views
Comment: Comment: Genomic coordinates in the BioNano VCF
15 months ago by cmdcolin ★ 4.3k
1
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1
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868
views
Answer: Answer: Genomic coordinates in the BioNano VCF
15 months ago by cmdcolin ★ 4.3k
0
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0
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1.4k
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Comment: Comment: Minimap2 chimeric reads
15 months ago by cmdcolin ★ 4.3k
0
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0
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902
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Comment: Comment: Tools for chromosomal aneuploidy detection
15 months ago by cmdcolin ★ 4.3k
0
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0
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17k
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Comment: Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
16 months ago by cmdcolin ★ 4.3k
1
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0
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935
views
Comment: Comment: Load a full GFF3 into annotation track using arrow (Apollo)
17 months ago by cmdcolin ★ 4.3k
1
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0
replies
1.2k
views
Comment: Comment: Best genome browser for manual curation of gene structure(s)?
17 months ago by cmdcolin ★ 4.3k
3
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1
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1.2k
views
Answer: Answer: Best genome browser for manual curation of gene structure(s)?
17 months ago by cmdcolin ★ 4.3k
0
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1
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1.3k
views
Answer: Answer: Is it possible to set different tracks to the same scale in JBrowse
17 months ago by cmdcolin ★ 4.3k
0
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0
replies
1.8k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 months ago by cmdcolin ★ 4.3k
0
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1
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1.8k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 months ago by cmdcolin ★ 4.3k
1
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1
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1.8k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 months ago by cmdcolin ★ 4.3k
1
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1
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1.8k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 months ago by cmdcolin ★ 4.3k
600 results • Page 2 of 12
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