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3
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330
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Answer: Answer: Best genome browser for manual curation of gene structure(s)?
20 days ago by cmdcolin ★ 3.8k
0
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1
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508
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Answer: Answer: Is it possible to set different tracks to the same scale in JBrowse
20 days ago by cmdcolin ★ 3.8k
2
votes
0
replies
273
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Answer: Answer: gene alignment (microsynteny)
9 weeks ago by cmdcolin ★ 3.8k
0
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1
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595
views
Answer: Answer: hg38 goldenPath cpgIsland is down?
11 weeks ago by cmdcolin ★ 3.8k
2
votes
0
replies
357
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Answer: Answer: Impossible gene fusion annotations
3 months ago by cmdcolin ★ 3.8k
0
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0
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454
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Answer: Answer: Bacterial Synteny Tools
3 months ago by cmdcolin ★ 3.8k
1
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2
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536
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Answer: Answer: How to draw genome atlas on Linux?
3 months ago by cmdcolin ★ 3.8k
2
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1
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954
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Answer: Answer: Where can I find a vcf file with individuals in it, that have a specific disease
4 months ago by cmdcolin ★ 3.8k
2
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1
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1.2k
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Answer: Answer: extract sequence from genome by region
4 months ago by cmdcolin ★ 3.8k
2
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0
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1.7k
views
Answer: Answer: How to query 1000 genomes project VCF files for specific regions without downloa
4 months ago by cmdcolin ★ 3.8k
0
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0
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13k
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Answer: Answer: Which program, tool, or strategy do you use to visualize genomic rearrangements?
5 months ago by cmdcolin ★ 3.8k
1
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1
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825
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Answer: Answer: Finding human .vcf files online to download
5 months ago by cmdcolin ★ 3.8k
1
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1
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579
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Answer: Answer: Finding exons that are always included
5 months ago by cmdcolin ★ 3.8k
1
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0
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3.2k
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Answer: Answer: Visualization of maf alignments in JBrowse
5 months ago by cmdcolin ★ 3.8k
0
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1
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557
views
Answer: Answer: Browser based tool for generating protein alignment figure
5 months ago by cmdcolin ★ 3.8k
3
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1
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1.4k
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Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
6 months ago by cmdcolin ★ 3.8k
1
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0
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774
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Answer: Answer: Why is my genome assembly not aligning well?
7 months ago by cmdcolin ★ 3.8k
0
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0
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1.6k
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Answer: Answer: Can BWA (mem) detect longer deletions?
7 months ago by cmdcolin ★ 3.8k
1
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1
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723
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Answer: Answer: GRCh37/38 reference genotype AF wrong ?
7 months ago by cmdcolin ★ 3.8k
2
votes
1
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735
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Answer: Answer: Recapitulating a GenomeBrowser-style plot
8 months ago by cmdcolin ★ 3.8k
0
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0
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1.2k
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Answer: Answer: Fasta file is not converting properly to Indexed Fasta File
updated 8 months ago by 141k • written 8 months ago by ★ 3.8k
0
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0
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575
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Answer: Answer: Combining Multiple Tracks in JBrowse2
8 months ago by cmdcolin ★ 3.8k
1
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0
replies
5.8k
views
Answer: Answer: Coverage plot of a complete genome
8 months ago by cmdcolin ★ 3.8k
1
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0
replies
10k
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Answer: Answer: Alternatives To Liftover
8 months ago by cmdcolin ★ 3.8k
1
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0
replies
681
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Answer: Answer: Integration more than one million cell
9 months ago by cmdcolin ★ 3.8k
1
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1
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857
views
Answer: Answer: Factors affecting the size of a structural variant
9 months ago by cmdcolin ★ 3.8k
1
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1
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491
views
Answer: Answer: How to Replicate JBrowse Plot
9 months ago by cmdcolin ★ 3.8k
1
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0
replies
602
views
Answer: Answer: synteny viewer
10 months ago by cmdcolin ★ 3.8k
1
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1
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757
views
Answer: Answer: How to Split 3000 WGS CRAM files into 1Mbp length chunks
11 months ago by cmdcolin ★ 3.8k
2
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1
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906
views
Answer: Answer: interpreting inversions on IGV
11 months ago by cmdcolin ★ 3.8k
0
votes
0
replies
881
views
Answer: Answer: Fast BAM header editing
11 months ago by cmdcolin ★ 3.8k
0
votes
2
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768
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Answer: Answer: Haplotype specific alleles
11 months ago by cmdcolin ★ 3.8k
0
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1
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790
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Answer: Answer: Detecting heterozygous deletions in NGS sequence data
12 months ago by cmdcolin ★ 3.8k
3
votes
1
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2.2k
views
Answer: Answer: How to perform synteny alignments and plots only with a gene?
13 months ago by cmdcolin ★ 3.8k
0
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1
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1.2k
views
Answer: Answer: How to remove homozygous reference genotypes from multi-sample vcf file based on
13 months ago by cmdcolin ★ 3.8k
2
votes
0
replies
1.0k
views
Answer: Answer: How to create a graph that shows pairwise Fst values at single SNP loci across t
13 months ago by cmdcolin ★ 3.8k
4
votes
1
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1.5k
views
Answer: Answer: Realigning BAM files to new reference
13 months ago by cmdcolin ★ 3.8k
2
votes
1
reply
2.5k
views
Answer: Answer: Rust bioinformatics projects ideas
14 months ago by cmdcolin ★ 3.8k
0
votes
1
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832
views
Answer: Answer: Alternatives to Lollipop for virus variant data
14 months ago by cmdcolin ★ 3.8k
4
votes
1
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1.1k
views
Answer: Answer: Gviz python alternative
15 months ago by cmdcolin ★ 3.8k
4
votes
1
reply
2.2k
views
Answer: Answer: Mapping a small number of contigs to a reference subsequence
15 months ago by cmdcolin ★ 3.8k
0
votes
1
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762
views
Answer: Answer: Program to View Average Coverage with Variance of BAM/Bigwig Files?
15 months ago by cmdcolin ★ 3.8k
2
votes
1
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869
views
Answer: Answer: JBrowse on GitHub (A question about file size)
15 months ago by cmdcolin ★ 3.8k
0
votes
0
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4.8k
views
Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
15 months ago by cmdcolin ★ 3.8k
4
votes
2
replies
1.6k
views
Answer: Answer: How to calculate coverage of Nanopore long read data?
7 weeks ago by cmdcolin ★ 3.8k
3
votes
1
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962
views
Answer: Answer: remove CIGAR strings starting with insertion
16 months ago by cmdcolin ★ 3.8k
3
votes
1
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775
views
Answer: Answer: Gene location of both inherited gene
16 months ago by cmdcolin ★ 3.8k
1
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1
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1.4k
views
Answer: Answer: How is p-value calculated in MACS2
16 months ago by cmdcolin ★ 3.8k
2
votes
1
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18k
views
Answer: Answer: What's Supplementary Reads?
17 months ago by cmdcolin ★ 3.8k
4
votes
1
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92k
views
Answer: Answer: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
17 months ago by cmdcolin ★ 3.8k
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