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Comment: Comment: How to write a Python script to edit a .vcf file?
2.5 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to write a Python script to edit a .vcf file?
2.5 years ago by sbstevenlee ▴ 480
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Comment: Comment: Applying Machine Learning on vcf file
2.5 years ago by sbstevenlee ▴ 480
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Answer: Answer: Applying Machine Learning on vcf file
2.5 years ago by sbstevenlee ▴ 480
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Comment: Comment: compare two vcf files
2.6 years ago by sbstevenlee ▴ 480
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2.4k
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Comment: Comment: compare two vcf files
2.6 years ago by sbstevenlee ▴ 480
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2.4k
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Comment: Comment: compare two vcf files
2.6 years ago by sbstevenlee ▴ 480
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2.6k
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Answer: Answer: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by sbstevenlee ▴ 480
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Answer: Answer: Filter on Allele Balance using BCFTools
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: Variant Calling Heterozygous Reference Alleles
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: Allele frequency calculation
2.7 years ago by sbstevenlee ▴ 480
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Comment: Comment: plotting AF in vcf files
2.7 years ago by sbstevenlee ▴ 480
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3.4k
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Answer: Answer: plotting AF in vcf files
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to subset vcf by sample and write?
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to calculate genotype concordance, comparing two .vcf files with Picard or S
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: TypeError: must be real number, not dict in python
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: Filter vcf file based on the GTs of a single sample
2.8 years ago by sbstevenlee ▴ 480
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2.5k
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Answer: Answer: how to filter out all the homozygous genotypes in a multi sample VCF file?
2.8 years ago by sbstevenlee ▴ 480
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Comment: Comment: Amount of unique variants in VCF with linux terminal
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to filter VCF by the variant allele depth of a specific sample
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: Convert missing genotype ./. to homozygous 0/0 in vcf
2.8 years ago by sbstevenlee ▴ 480
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603
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Answer: Answer: Adding fakes genotypes columns to a vcf file
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to filter gnomADe_AF < 0.001 with unix?
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: Mutational landscape plot from VCF files
2.8 years ago by sbstevenlee ▴ 480
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Comment: Comment: Generating Positional List from VCF
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: Generating Positional List from VCF
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: Mutational landscape plot from VCF files
2.8 years ago by sbstevenlee ▴ 480
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2.5k
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Answer: Answer: Amount of unique variants in VCF with linux terminal
2.8 years ago by sbstevenlee ▴ 480
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1
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1.2k
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Comment: Comment: Compare gene coverage across group o samples
2.9 years ago by sbstevenlee ▴ 480
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1.9k
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Answer: Answer: Filter GQ , DP and Allele Balance in VCF
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: bcftools merge
2.9 years ago by sbstevenlee ▴ 480
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Comment: Comment: bcftools filter by protein prediction
2.9 years ago by sbstevenlee ▴ 480
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3.5k
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Comment: Comment: bcftools filter by protein prediction
2.9 years ago by sbstevenlee ▴ 480
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2.2k
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Answer: Answer: bcftools plugin fill-tags with functions
2.9 years ago by sbstevenlee ▴ 480
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1.2k
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Answer: Answer: Duplicate results in vardict vcf
2.9 years ago by sbstevenlee ▴ 480
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3.5k
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Answer: Answer: bcftools filter by protein prediction
2.9 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to remove samples with no genotypes from vcf
2.9 years ago by sbstevenlee ▴ 480
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4.3k
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Answer: Answer: How to remove samples with no genotypes from vcf
2.9 years ago by sbstevenlee ▴ 480
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6.6k
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Answer: Answer: How to make a summary plot like below?
2.9 years ago by sbstevenlee ▴ 480
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Answer: Answer: > 90% samples, DP > 10
2.9 years ago by sbstevenlee ▴ 480
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Answer: Answer: merging two VCF files
2.9 years ago by sbstevenlee ▴ 480
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1.6k
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Comment: Comment: Is Ensemble VEP down right now?
2.9 years ago by sbstevenlee ▴ 480
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5.8k
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Answer: Answer: Difficulty filtering VCF file with vcftools
2.9 years ago by sbstevenlee ▴ 480
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1.6k
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Comment: Comment: Is Ensemble VEP down right now?
2.9 years ago by sbstevenlee ▴ 480
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1.6k
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Comment: Comment: Is Ensemble VEP down right now?
2.9 years ago by sbstevenlee ▴ 480
3
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6
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1.6k
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Is Ensembl VEP down right now?
Ensembl VEP
updated 2.9 years ago by ▴ 290 • written 2.9 years ago by ▴ 480
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Comment: C: what is the deal with bioconda?
3.4 years ago by sbstevenlee ▴ 480
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1.2k
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Answer: A: Error on pysam.bcftools.mpileup: "Segmentation fault (core dumped)"
updated 3.8 years ago by 3.0k • written 3.8 years ago by ▴ 480
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1.2k
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Error on pysam.bcftools.mpileup: "Segmentation fault (core dumped)"
pysam bcftools mpileup samtools
3.8 years ago by sbstevenlee ▴ 480
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