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Answer: A: Trinity assembly result check
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 2.2k
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Answer: A: How to write effective and stable bioinformatics pipeline in R ?
updated 5.5 years ago by 45k • written 10.6 years ago by ★ 2.2k
2
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Answer: A: cannot import pysam. Module has no attribute error
updated 5.5 years ago by 45k • written 9.9 years ago by ★ 2.2k
11
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1
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142k
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Answer: A: Fastq Convert To Fasta
updated 5.5 years ago by 45k • written 11.5 years ago by ★ 2.2k
2
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1
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6.2k
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Answer: A: exact command for read normalization using trinity software
updated 5.6 years ago by 45k • written 10.5 years ago by ★ 2.2k
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1
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3.3k
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Answer: A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 5.6 years ago by 45k • written 10.5 years ago by ★ 2.2k
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1
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3.9k
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Answer: A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 5.6 years ago by 45k • written 10.5 years ago by ★ 2.2k
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1
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4.3k
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Answer: A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 5.6 years ago by 45k • written 10.5 years ago by ★ 2.2k
4
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1
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7.2k
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Answer: A: How come that the Trinity assembler seems to work on a computer with low memory
updated 5.6 years ago by 45k • written 10.6 years ago by ★ 2.2k
4
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1
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8.9k
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Answer: A: Roche 454: How to know if reads are paired ?
updated 5.6 years ago by 45k • written 10.7 years ago by ★ 2.2k
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Answer: Answer: Assemble a segment of genome denovo
updated 2.7 years ago by 45k • written 9.7 years ago by ★ 2.2k
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1
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3.1k
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Answer: A: How to set parameters for SOAPdenovo-Trans
9.7 years ago by rtliu ★ 2.2k
2
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1
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4.3k
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Answer: Answer: dependency plyr in R 2.15.1
updated 2.5 years ago by 45k • written 9.9 years ago by ★ 2.2k
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2.2k
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Answer: Answer: how to work with sff file generate from roche_454
updated 2.5 years ago by 45k • written 9.9 years ago by ★ 2.2k
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Answer: Answer: ipython notebooks on bioinformatics and genomics
updated 2.5 years ago by 45k • written 9.9 years ago by ★ 2.2k
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2
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Answer: Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 2.3 years ago by 45k • written 10.0 years ago by ★ 2.2k
9
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1
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Answer: Answer: How to randamly extract reads from a FASTQ file?
updated 2.3 years ago by 45k • written 10.0 years ago by ★ 2.2k
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0
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58k
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Answer: Answer: how to unzip the files in batch?
updated 2.4 years ago by 45k • written 10.0 years ago by ★ 2.2k
1
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1
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23k
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Answer: Answer: Recommendations For Heterozygous Genome Assembly Software
updated 2.4 years ago by 45k • written 10.1 years ago by ★ 2.2k
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0
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1.9k
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Answer: A: Pacbio Smrtanalysis Ova Image?
10.1 years ago by rtliu ★ 2.2k
1
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1
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4.0k
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Answer: Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 2.9 years ago by 45k • written 10.2 years ago by ★ 2.2k
3
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1
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7.5k
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Answer: A: Trimmomatic not able to remove low sequence bases
10.2 years ago by rtliu ★ 2.2k
3
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0
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3.9k
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Answer: A: script to check the size of given contig
10.2 years ago by rtliu ★ 2.2k
1
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0
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5.8k
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Answer: Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
4
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0
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14k
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Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
4
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0
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12k
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Answer: Answer: what is the Hiseq 2000 adaptor sequences
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
3
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0
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13k
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Answer: Answer: NGS reads simulation
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
3
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1
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13k
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Answer: Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
1
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1
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5.5k
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Answer: Answer: Error correction in sequence Assembly
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
2
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0
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8.2k
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Answer: Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
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0
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7.1k
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Answer: Answer: Problems in use of seqtk subseq
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
7
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0
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79k
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Answer: Answer: combining fasta files
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
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0
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2.0k
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Answer: Answer: optical map & assembly
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 2.2k
1
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1
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13k
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Answer: Answer: Which Phred value to use in trimming
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 2.2k
3
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1
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3.6k
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Answer: Answer: The best factors to evaluate the quality of de novo transcriptome assembly
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 2.2k
2
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0
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3.5k
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Answer: Answer: The "perils" of using content from Biostars
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.2k
0
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0
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4.1k
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Answer: Answer: converting a fasta database to blastp database
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 2.2k
2
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0
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20k
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Answer: Answer: Trimmomatic not removing TruSeq3 adapters
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.2k
0
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1
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5.4k
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Answer: Answer: De novo assembly for virus genome with Velvet.
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.2k
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0
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2.1k
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Answer: Answer: How much computing resources does an ABySS run take
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.2k
8
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1
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18k
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Answer: Answer: Best software to assemble bacterial genomes
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 2.2k
1
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0
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4.9k
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Answer: Answer: memory requirments of velvet tool (de novo assembly)
updated 3.5 years ago by 45k • written 10.5 years ago by ★ 2.2k
3
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1
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2.2k
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Answer: Answer: in-house blast DB creation
updated 3.5 years ago by 45k • written 10.5 years ago by ★ 2.2k
2
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0
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3.9k
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Answer: Answer: Suggested genome assembly workshop
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 2.2k
2
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1
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6.3k
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Answer: Answer: MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.2k
1
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1
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11k
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Answer: Answer: scaffolds and contigs SPADES
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.2k
3
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0
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3.4k
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Answer: Answer: paired-reads assembly problem with so many contigs
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.2k
1
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0
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3.7k
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Answer: Answer: PacBio Technology Assemblers
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.2k
1
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0
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4.0k
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Answer: Answer: Mitochondrial denovo assembly
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.2k
2
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1
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5.7k
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Answer: A: What input does blastdb_aliastool need?
10.6 years ago by rtliu ★ 2.2k
68 results • Page 1 of 2
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