Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
1
vote
0
replies
2.5k
views
Answer:
A: Trinity assembly result check
updated 3.8 years ago by
Ram
40k • written 7.8 years ago by
rtliu
★ 2.2k
0
votes
0
replies
5.6k
views
Answer:
A: How to write effective and stable bioinformatics pipeline in R ?
updated 3.9 years ago by
Ram
40k • written 9.0 years ago by
rtliu
★ 2.2k
2
votes
0
replies
10k
views
Answer:
A: cannot import pysam. Module has no attribute error
updated 3.9 years ago by
Ram
40k • written 8.2 years ago by
rtliu
★ 2.2k
11
votes
1
reply
122k
views
Answer:
A: Fastq Convert To Fasta
updated 3.9 years ago by
Ram
40k • written 9.9 years ago by
rtliu
★ 2.2k
2
votes
1
reply
5.3k
views
Answer:
A: exact command for read normalization using trinity software
updated 4.0 years ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
0
votes
1
reply
2.8k
views
Answer:
A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 4.0 years ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.3k
views
Answer:
A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 4.0 years ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.6k
views
Answer:
A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 4.0 years ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
4
votes
1
reply
6.1k
views
Answer:
A: How come that the Trinity assembler seems to work on a computer with low memory
updated 4.0 years ago by
Ram
40k • written 9.0 years ago by
rtliu
★ 2.2k
4
votes
1
reply
7.8k
views
Answer:
A: Roche 454: How to know if reads are paired ?
updated 4.0 years ago by
Ram
40k • written 9.1 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.9k
views
Answer:
Answer: Assemble a segment of genome denovo
updated 12 months ago by
Ram
40k • written 8.0 years ago by
rtliu
★ 2.2k
1
vote
1
reply
2.6k
views
Answer:
A: How to set parameters for SOAPdenovo-Trans
8.0 years ago by
rtliu
★ 2.2k
2
votes
1
reply
3.9k
views
Answer:
Answer: dependency plyr in R 2.15.1
updated 10 months ago by
Ram
40k • written 8.2 years ago by
rtliu
★ 2.2k
1
vote
0
replies
1.9k
views
Answer:
Answer: how to work with sff file generate from roche_454
updated 10 months ago by
Ram
40k • written 8.2 years ago by
rtliu
★ 2.2k
2
votes
0
replies
5.4k
views
Answer:
Answer: ipython notebooks on bioinformatics and genomics
updated 9 months ago by
Ram
40k • written 8.2 years ago by
rtliu
★ 2.2k
0
votes
2
replies
2.6k
views
Answer:
Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 8 months ago by
Ram
40k • written 8.4 years ago by
rtliu
★ 2.2k
9
votes
1
reply
11k
views
Answer:
Answer: How to randamly extract reads from a FASTQ file?
updated 8 months ago by
Ram
40k • written 8.4 years ago by
rtliu
★ 2.2k
0
votes
0
replies
46k
views
Answer:
Answer: how to unzip the files in batch?
updated 8 months ago by
Ram
40k • written 8.4 years ago by
rtliu
★ 2.2k
1
vote
1
reply
18k
views
Answer:
Answer: Recommendations For Heterozygous Genome Assembly Software
updated 8 months ago by
Ram
40k • written 8.4 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.6k
views
Answer:
A: Pacbio Smrtanalysis Ova Image?
8.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.2k
views
Answer:
Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 15 months ago by
Ram
40k • written 8.5 years ago by
rtliu
★ 2.2k
3
votes
1
reply
6.6k
views
Answer:
A: Trimmomatic not able to remove low sequence bases
8.5 years ago by
rtliu
★ 2.2k
3
votes
0
replies
3.2k
views
Answer:
A: script to check the size of given contig
8.5 years ago by
rtliu
★ 2.2k
1
vote
0
replies
4.8k
views
Answer:
Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 17 months ago by
Ram
40k • written 8.6 years ago by
rtliu
★ 2.2k
4
votes
0
replies
12k
views
Answer:
Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 17 months ago by
Ram
40k • written 8.6 years ago by
rtliu
★ 2.2k
4
votes
0
replies
10k
views
Answer:
Answer: what is the Hiseq 2000 adaptor sequences
updated 17 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
3
votes
0
replies
11k
views
Answer:
Answer: NGS reads simulation
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
3
votes
1
reply
11k
views
Answer:
Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
1
vote
1
reply
4.7k
views
Answer:
Answer: Error correction in sequence Assembly
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
2
votes
0
replies
6.8k
views
Answer:
Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
0
votes
0
replies
5.8k
views
Answer:
Answer: Problems in use of seqtk subseq
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
7
votes
0
replies
64k
views
Answer:
Answer: combining fasta files
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.7k
views
Answer:
Answer: optical map & assembly
updated 18 months ago by
Ram
40k • written 8.7 years ago by
rtliu
★ 2.2k
1
vote
1
reply
11k
views
Answer:
Answer: Which Phred value to use in trimming
updated 18 months ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
3
votes
1
reply
3.2k
views
Answer:
Answer: The best factors to evaluate the quality of de novo transcriptome assembly
updated 19 months ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
2
votes
0
replies
2.8k
views
Answer:
Answer: The "perils" of using content from Biostars
updated 19 months ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
0
votes
0
replies
3.7k
views
Answer:
Answer: converting a fasta database to blastp database
updated 20 months ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
2
votes
0
replies
18k
views
Answer:
Answer: Trimmomatic not removing TruSeq3 adapters
updated 19 months ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
0
votes
1
reply
4.7k
views
Answer:
Answer: De novo assembly for virus genome with Velvet.
updated 19 months ago by
Ram
40k • written 8.8 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.8k
views
Answer:
Answer: How much computing resources does an ABySS run take
updated 19 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
8
votes
1
reply
16k
views
Answer:
Answer: Best software to assemble bacterial genomes
updated 19 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
1
vote
0
replies
4.4k
views
Answer:
Answer: memory requirments of velvet tool (de novo assembly)
updated 22 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
3
votes
1
reply
1.9k
views
Answer:
Answer: in-house blast DB creation
updated 22 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
2
votes
0
replies
3.3k
views
Answer:
Answer: Suggested genome assembly workshop
updated 20 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
2
votes
1
reply
5.3k
views
Answer:
Answer: MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and
updated 21 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
1
vote
1
reply
10k
views
Answer:
Answer: scaffolds and contigs SPADES
updated 20 months ago by
Ram
40k • written 8.9 years ago by
rtliu
★ 2.2k
3
votes
0
replies
3.0k
views
Answer:
Answer: paired-reads assembly problem with so many contigs
updated 20 months ago by
Ram
40k • written 9.0 years ago by
rtliu
★ 2.2k
1
vote
0
replies
3.1k
views
Answer:
Answer: PacBio Technology Assemblers
updated 20 months ago by
Ram
40k • written 9.0 years ago by
rtliu
★ 2.2k
1
vote
0
replies
3.6k
views
Answer:
Answer: Mitochondrial denovo assembly
updated 20 months ago by
Ram
40k • written 9.0 years ago by
rtliu
★ 2.2k
2
votes
1
reply
4.6k
views
Answer:
A: What input does blastdb_aliastool need?
9.0 years ago by
rtliu
★ 2.2k
68 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6