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Answer: A: Trinity assembly result check
updated 3.8 years ago by 40k • written 7.8 years ago by ★ 2.2k
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Answer: A: How to write effective and stable bioinformatics pipeline in R ?
updated 3.9 years ago by 40k • written 9.0 years ago by ★ 2.2k
2
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Answer: A: cannot import pysam. Module has no attribute error
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 2.2k
11
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1
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122k
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Answer: A: Fastq Convert To Fasta
updated 3.9 years ago by 40k • written 9.9 years ago by ★ 2.2k
2
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1
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5.3k
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Answer: A: exact command for read normalization using trinity software
updated 4.0 years ago by 40k • written 8.8 years ago by ★ 2.2k
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1
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2.8k
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Answer: A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 4.0 years ago by 40k • written 8.9 years ago by ★ 2.2k
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1
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3.3k
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Answer: A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 4.0 years ago by 40k • written 8.9 years ago by ★ 2.2k
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1
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3.6k
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Answer: A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 4.0 years ago by 40k • written 8.9 years ago by ★ 2.2k
4
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1
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6.1k
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Answer: A: How come that the Trinity assembler seems to work on a computer with low memory
updated 4.0 years ago by 40k • written 9.0 years ago by ★ 2.2k
4
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1
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7.8k
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Answer: A: Roche 454: How to know if reads are paired ?
updated 4.0 years ago by 40k • written 9.1 years ago by ★ 2.2k
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Answer: Answer: Assemble a segment of genome denovo
updated 12 months ago by 40k • written 8.0 years ago by ★ 2.2k
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1
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2.6k
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Answer: A: How to set parameters for SOAPdenovo-Trans
8.0 years ago by rtliu ★ 2.2k
2
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1
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3.9k
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Answer: Answer: dependency plyr in R 2.15.1
updated 10 months ago by 40k • written 8.2 years ago by ★ 2.2k
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1.9k
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Answer: Answer: how to work with sff file generate from roche_454
updated 10 months ago by 40k • written 8.2 years ago by ★ 2.2k
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Answer: Answer: ipython notebooks on bioinformatics and genomics
updated 9 months ago by 40k • written 8.2 years ago by ★ 2.2k
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2
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2.6k
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Answer: Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 8 months ago by 40k • written 8.4 years ago by ★ 2.2k
9
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1
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11k
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Answer: Answer: How to randamly extract reads from a FASTQ file?
updated 8 months ago by 40k • written 8.4 years ago by ★ 2.2k
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0
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46k
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Answer: Answer: how to unzip the files in batch?
updated 8 months ago by 40k • written 8.4 years ago by ★ 2.2k
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1
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18k
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Answer: Answer: Recommendations For Heterozygous Genome Assembly Software
updated 8 months ago by 40k • written 8.4 years ago by ★ 2.2k
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0
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1.6k
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Answer: A: Pacbio Smrtanalysis Ova Image?
8.5 years ago by rtliu ★ 2.2k
1
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1
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3.2k
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Answer: Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 15 months ago by 40k • written 8.5 years ago by ★ 2.2k
3
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1
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6.6k
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Answer: A: Trimmomatic not able to remove low sequence bases
8.5 years ago by rtliu ★ 2.2k
3
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0
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3.2k
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Answer: A: script to check the size of given contig
8.5 years ago by rtliu ★ 2.2k
1
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0
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4.8k
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Answer: Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 17 months ago by 40k • written 8.6 years ago by ★ 2.2k
4
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0
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12k
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Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 17 months ago by 40k • written 8.6 years ago by ★ 2.2k
4
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0
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10k
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Answer: Answer: what is the Hiseq 2000 adaptor sequences
updated 17 months ago by 40k • written 8.7 years ago by ★ 2.2k
3
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0
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11k
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Answer: Answer: NGS reads simulation
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
3
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1
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11k
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Answer: Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
1
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1
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4.7k
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Answer: Answer: Error correction in sequence Assembly
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
2
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0
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6.8k
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Answer: Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
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0
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5.8k
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Answer: Answer: Problems in use of seqtk subseq
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
7
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0
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64k
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Answer: Answer: combining fasta files
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
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0
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1.7k
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Answer: Answer: optical map & assembly
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.2k
1
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1
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11k
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Answer: Answer: Which Phred value to use in trimming
updated 18 months ago by 40k • written 8.8 years ago by ★ 2.2k
3
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1
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3.2k
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Answer: Answer: The best factors to evaluate the quality of de novo transcriptome assembly
updated 19 months ago by 40k • written 8.8 years ago by ★ 2.2k
2
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0
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2.8k
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Answer: Answer: The "perils" of using content from Biostars
updated 19 months ago by 40k • written 8.8 years ago by ★ 2.2k
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0
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3.7k
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Answer: Answer: converting a fasta database to blastp database
updated 20 months ago by 40k • written 8.8 years ago by ★ 2.2k
2
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0
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18k
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Answer: Answer: Trimmomatic not removing TruSeq3 adapters
updated 19 months ago by 40k • written 8.8 years ago by ★ 2.2k
0
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1
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4.7k
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Answer: Answer: De novo assembly for virus genome with Velvet.
updated 19 months ago by 40k • written 8.8 years ago by ★ 2.2k
0
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0
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1.8k
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Answer: Answer: How much computing resources does an ABySS run take
updated 19 months ago by 40k • written 8.9 years ago by ★ 2.2k
8
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1
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16k
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Answer: Answer: Best software to assemble bacterial genomes
updated 19 months ago by 40k • written 8.9 years ago by ★ 2.2k
1
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0
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4.4k
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Answer: Answer: memory requirments of velvet tool (de novo assembly)
updated 22 months ago by 40k • written 8.9 years ago by ★ 2.2k
3
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1
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1.9k
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Answer: Answer: in-house blast DB creation
updated 22 months ago by 40k • written 8.9 years ago by ★ 2.2k
2
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0
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3.3k
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Answer: Answer: Suggested genome assembly workshop
updated 20 months ago by 40k • written 8.9 years ago by ★ 2.2k
2
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1
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5.3k
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Answer: Answer: MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and
updated 21 months ago by 40k • written 8.9 years ago by ★ 2.2k
1
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1
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10k
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Answer: Answer: scaffolds and contigs SPADES
updated 20 months ago by 40k • written 8.9 years ago by ★ 2.2k
3
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0
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3.0k
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Answer: Answer: paired-reads assembly problem with so many contigs
updated 20 months ago by 40k • written 9.0 years ago by ★ 2.2k
1
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0
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3.1k
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Answer: Answer: PacBio Technology Assemblers
updated 20 months ago by 40k • written 9.0 years ago by ★ 2.2k
1
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0
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3.6k
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Answer: Answer: Mitochondrial denovo assembly
updated 20 months ago by 40k • written 9.0 years ago by ★ 2.2k
2
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1
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4.6k
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Answer: A: What input does blastdb_aliastool need?
9.0 years ago by rtliu ★ 2.2k
68 results • Page 1 of 2
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