Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
2.7k
views
Answer: A: Trinity assembly result check
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.2k
0
votes
0
replies
6.0k
views
Answer: A: How to write effective and stable bioinformatics pipeline in R ?
updated 4.4 years ago by 43k • written 9.6 years ago by ★ 2.2k
2
votes
0
replies
11k
views
Answer: A: cannot import pysam. Module has no attribute error
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 2.2k
11
votes
1
reply
128k
views
Answer: A: Fastq Convert To Fasta
updated 4.5 years ago by 43k • written 10.5 years ago by ★ 2.2k
0
votes
2
replies
5.6k
views
Comment: C: exact command for read normalization using trinity software
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.2k
2
votes
1
reply
5.6k
views
Answer: A: exact command for read normalization using trinity software
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.2k
0
votes
1
reply
3.0k
views
Answer: A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.2k
1
vote
1
reply
3.5k
views
Answer: A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.2k
0
votes
1
reply
3.5k
views
Comment: C: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 4.5 years ago by 43k • written 9.4 years ago by ★ 2.2k
1
vote
1
reply
3.8k
views
Answer: A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 4.5 years ago by 43k • written 9.5 years ago by ★ 2.2k
4
votes
1
reply
6.3k
views
Answer: A: How come that the Trinity assembler seems to work on a computer with low memory
updated 4.5 years ago by 43k • written 9.6 years ago by ★ 2.2k
4
votes
1
reply
8.2k
views
Answer: A: Roche 454: How to know if reads are paired ?
updated 4.5 years ago by 43k • written 9.6 years ago by ★ 2.2k
1
vote
1
reply
5.5k
views
Comment: A: samtools/bcftools/htslib 1.0 released
updated 4.5 years ago by 43k • written 9.7 years ago by ★ 2.2k
4
votes
2
replies
3.1k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 13 months ago by 43k • written 8.6 years ago by ★ 2.2k
0
votes
0
replies
2.0k
views
Answer: Answer: Assemble a segment of genome denovo
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.2k
4
votes
0
replies
2.8k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 13 months ago by 43k • written 8.6 years ago by ★ 2.2k
1
vote
1
reply
2.8k
views
Answer: A: How to set parameters for SOAPdenovo-Trans
8.6 years ago by rtliu ★ 2.2k
2
votes
1
reply
9.7k
views
Comment: Comment: Install HGAP for de novo PacBio Assembly
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.2k
1
vote
1
reply
3.3k
views
Comment: C: Error with SRA downloaded reads and SPAdes 3.1.0
8.6 years ago by rtliu ★ 2.2k
0
votes
0
replies
2.3k
views
News: Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.2k
6
votes
0
replies
1.7k
views
News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 18 months ago by 43k • written 8.8 years ago by ★ 2.2k
2
votes
1
reply
4.0k
views
Answer: Answer: dependency plyr in R 2.15.1
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.2k
1
vote
0
replies
2.0k
views
Answer: Answer: how to work with sff file generate from roche_454
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.2k
2
votes
0
replies
5.6k
views
Answer: Answer: ipython notebooks on bioinformatics and genomics
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.2k
0
votes
2
replies
2.7k
views
Answer: Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.2k
9
votes
1
reply
12k
views
Answer: Answer: How to randamly extract reads from a FASTQ file?
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.2k
0
votes
0
replies
51k
views
Answer: Answer: how to unzip the files in batch?
updated 15 months ago by 43k • written 9.0 years ago by ★ 2.2k
0
votes
0
replies
4.8k
views
Comment: Comment: Error during Trinity running with the recent version?
updated 2.1 years ago by 43k • written 9.0 years ago by ★ 2.2k
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 2.2k
1
vote
1
reply
19k
views
Answer: Answer: Recommendations For Heterozygous Genome Assembly Software
updated 15 months ago by 43k • written 9.0 years ago by ★ 2.2k
1
vote
1
reply
13k
views
Comment: Comment: Pacbio: extract fastq from h5 file based on quality filtering
updated 2.0 years ago by 43k • written 9.0 years ago by ★ 2.2k
20
votes
3
replies
2.7k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
0
votes
0
replies
1.7k
views
Answer: A: Pacbio Smrtanalysis Ova Image?
9.1 years ago by rtliu ★ 2.2k
1
vote
1
reply
6.9k
views
Comment: C: Trimmomatic not able to remove low sequence bases
9.1 years ago by rtliu ★ 2.2k
0
votes
1
reply
3.4k
views
Comment: Comment: Different results with BLAST depending on if subject is formatted database or FA
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
1
vote
1
reply
3.4k
views
Answer: Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
3
votes
1
reply
6.9k
views
Answer: A: Trimmomatic not able to remove low sequence bases
9.1 years ago by rtliu ★ 2.2k
3
votes
0
replies
3.4k
views
Answer: A: script to check the size of given contig
9.1 years ago by rtliu ★ 2.2k
1
vote
0
replies
5.1k
views
Answer: Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
4
votes
0
replies
12k
views
Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
4
votes
0
replies
11k
views
Answer: Answer: what is the Hiseq 2000 adaptor sequences
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
3
votes
0
replies
12k
views
Answer: Answer: NGS reads simulation
updated 2.1 years ago by 43k • written 9.2 years ago by ★ 2.2k
3
votes
1
reply
12k
views
Answer: Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
1
vote
1
reply
4.9k
views
Answer: Answer: Error correction in sequence Assembly
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
2
votes
0
replies
7.2k
views
Answer: Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
0
votes
0
replies
6.2k
views
Answer: Answer: Problems in use of seqtk subseq
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
7
votes
0
replies
69k
views
Answer: Answer: combining fasta files
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
3
votes
0
replies
3.1k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
0
votes
0
replies
1.8k
views
Answer: Answer: optical map & assembly
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
1
vote
1
reply
12k
views
Answer: Answer: Which Phred value to use in trimming
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.2k
101 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6