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Answer: A: Trinity assembly result check
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.2k
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Answer: A: How to write effective and stable bioinformatics pipeline in R ?
updated 5.0 years ago by 44k • written 10.1 years ago by ★ 2.2k
2
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0
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11k
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Answer: A: cannot import pysam. Module has no attribute error
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 2.2k
11
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1
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135k
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Answer: A: Fastq Convert To Fasta
updated 5.0 years ago by 44k • written 11.0 years ago by ★ 2.2k
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2
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5.9k
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Comment: C: exact command for read normalization using trinity software
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 2.2k
2
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1
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5.9k
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Answer: A: exact command for read normalization using trinity software
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
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1
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3.1k
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Answer: A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
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1
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3.7k
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Answer: A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
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1
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3.7k
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Comment: C: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
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1
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4.0k
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Answer: A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 2.2k
4
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1
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6.7k
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Answer: A: How come that the Trinity assembler seems to work on a computer with low memory
updated 5.1 years ago by 44k • written 10.1 years ago by ★ 2.2k
4
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1
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8.5k
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Answer: A: Roche 454: How to know if reads are paired ?
updated 5.1 years ago by 44k • written 10.2 years ago by ★ 2.2k
1
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1
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5.8k
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Comment: A: samtools/bcftools/htslib 1.0 released
updated 5.1 years ago by 44k • written 10.2 years ago by ★ 2.2k
4
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2
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3.2k
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News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 19 months ago by 44k • written 9.1 years ago by ★ 2.2k
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0
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2.1k
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Answer: Answer: Assemble a segment of genome denovo
updated 2.2 years ago by 44k • written 9.1 years ago by ★ 2.2k
4
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0
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3.0k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 19 months ago by 44k • written 9.1 years ago by ★ 2.2k
1
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1
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2.9k
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Answer: A: How to set parameters for SOAPdenovo-Trans
9.1 years ago by rtliu ★ 2.2k
2
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1
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10k
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Comment: Comment: Install HGAP for de novo PacBio Assembly
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.2k
1
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1
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3.5k
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Comment: C: Error with SRA downloaded reads and SPAdes 3.1.0
9.2 years ago by rtliu ★ 2.2k
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0
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2.4k
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News: Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 2.1 years ago by 44k • written 9.2 years ago by ★ 2.2k
6
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0
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1.8k
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News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 2.0 years ago by 44k • written 9.3 years ago by ★ 2.2k
2
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1
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4.1k
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Answer: Answer: dependency plyr in R 2.15.1
updated 23 months ago by 44k • written 9.3 years ago by ★ 2.2k
1
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0
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2.1k
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Answer: Answer: how to work with sff file generate from roche_454
updated 23 months ago by 44k • written 9.3 years ago by ★ 2.2k
2
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0
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5.8k
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Answer: Answer: ipython notebooks on bioinformatics and genomics
updated 23 months ago by 44k • written 9.3 years ago by ★ 2.2k
0
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2
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2.8k
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Answer: Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 21 months ago by 44k • written 9.5 years ago by ★ 2.2k
9
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1
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12k
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Answer: Answer: How to randamly extract reads from a FASTQ file?
updated 21 months ago by 44k • written 9.5 years ago by ★ 2.2k
0
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0
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55k
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Answer: Answer: how to unzip the files in batch?
updated 22 months ago by 44k • written 9.5 years ago by ★ 2.2k
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0
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5.0k
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Comment: Comment: Error during Trinity running with the recent version?
updated 2.6 years ago by 44k • written 9.5 years ago by ★ 2.2k
9
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2
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14k
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News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 2.9 years ago by 44k • written 10.3 years ago by ★ 2.2k
1
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1
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21k
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Answer: Answer: Recommendations For Heterozygous Genome Assembly Software
updated 22 months ago by 44k • written 9.6 years ago by ★ 2.2k
1
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1
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14k
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Comment: Comment: Pacbio: extract fastq from h5 file based on quality filtering
updated 2.6 years ago by 44k • written 9.6 years ago by ★ 2.2k
20
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3
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2.8k
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News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
0
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0
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1.8k
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Answer: A: Pacbio Smrtanalysis Ova Image?
9.6 years ago by rtliu ★ 2.2k
1
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1
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7.2k
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Comment: C: Trimmomatic not able to remove low sequence bases
9.6 years ago by rtliu ★ 2.2k
0
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1
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3.6k
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Comment: Comment: Different results with BLAST depending on if subject is formatted database or FA
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
1
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1
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3.6k
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Answer: Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
3
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1
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7.2k
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Answer: A: Trimmomatic not able to remove low sequence bases
9.6 years ago by rtliu ★ 2.2k
3
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0
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3.6k
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Answer: A: script to check the size of given contig
9.6 years ago by rtliu ★ 2.2k
1
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0
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5.3k
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Answer: Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 2.6 years ago by 44k • written 9.7 years ago by ★ 2.2k
4
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0
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13k
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Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
4
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0
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11k
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Answer: Answer: what is the Hiseq 2000 adaptor sequences
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
3
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0
replies
13k
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Answer: Answer: NGS reads simulation
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
3
votes
1
reply
12k
views
Answer: Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
1
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1
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5.1k
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Answer: Answer: Error correction in sequence Assembly
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
2
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0
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7.7k
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Answer: Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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0
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6.7k
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Answer: Answer: Problems in use of seqtk subseq
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
7
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0
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Answer: Answer: combining fasta files
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
3
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0
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3.2k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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0
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1.9k
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Answer: Answer: optical map & assembly
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
1
vote
1
reply
13k
views
Answer: Answer: Which Phred value to use in trimming
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 2.2k
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