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Showing :
answers
1
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replies
2.8k
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Answer:
A: Trinity assembly result check
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
rtliu
★ 2.2k
0
votes
0
replies
6.0k
views
Answer:
A: How to write effective and stable bioinformatics pipeline in R ?
updated 4.5 years ago by
Ram
43k • written 9.6 years ago by
rtliu
★ 2.2k
2
votes
0
replies
11k
views
Answer:
A: cannot import pysam. Module has no attribute error
updated 4.5 years ago by
Ram
43k • written 8.8 years ago by
rtliu
★ 2.2k
11
votes
1
reply
129k
views
Answer:
A: Fastq Convert To Fasta
updated 4.5 years ago by
Ram
43k • written 10.5 years ago by
rtliu
★ 2.2k
2
votes
1
reply
5.7k
views
Answer:
A: exact command for read normalization using trinity software
updated 4.6 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
0
votes
1
reply
3.0k
views
Answer:
A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 4.6 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.5k
views
Answer:
A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 4.6 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.9k
views
Answer:
A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 4.6 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
4
votes
1
reply
6.4k
views
Answer:
A: How come that the Trinity assembler seems to work on a computer with low memory
updated 4.6 years ago by
Ram
43k • written 9.6 years ago by
rtliu
★ 2.2k
4
votes
1
reply
8.2k
views
Answer:
A: Roche 454: How to know if reads are paired ?
updated 4.6 years ago by
Ram
43k • written 9.7 years ago by
rtliu
★ 2.2k
0
votes
0
replies
2.1k
views
Answer:
Answer: Assemble a segment of genome denovo
updated 20 months ago by
Ram
43k • written 8.7 years ago by
rtliu
★ 2.2k
1
vote
1
reply
2.8k
views
Answer:
A: How to set parameters for SOAPdenovo-Trans
8.7 years ago by
rtliu
★ 2.2k
2
votes
1
reply
4.1k
views
Answer:
Answer: dependency plyr in R 2.15.1
updated 18 months ago by
Ram
43k • written 8.9 years ago by
rtliu
★ 2.2k
1
vote
0
replies
2.0k
views
Answer:
Answer: how to work with sff file generate from roche_454
updated 18 months ago by
Ram
43k • written 8.9 years ago by
rtliu
★ 2.2k
2
votes
0
replies
5.6k
views
Answer:
Answer: ipython notebooks on bioinformatics and genomics
updated 17 months ago by
Ram
43k • written 8.9 years ago by
rtliu
★ 2.2k
0
votes
2
replies
2.7k
views
Answer:
Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 16 months ago by
Ram
43k • written 9.0 years ago by
rtliu
★ 2.2k
9
votes
1
reply
12k
views
Answer:
Answer: How to randamly extract reads from a FASTQ file?
updated 16 months ago by
Ram
43k • written 9.0 years ago by
rtliu
★ 2.2k
0
votes
0
replies
51k
views
Answer:
Answer: how to unzip the files in batch?
updated 16 months ago by
Ram
43k • written 9.0 years ago by
rtliu
★ 2.2k
1
vote
1
reply
20k
views
Answer:
Answer: Recommendations For Heterozygous Genome Assembly Software
updated 16 months ago by
Ram
43k • written 9.1 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.7k
views
Answer:
A: Pacbio Smrtanalysis Ova Image?
9.1 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.5k
views
Answer:
Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 23 months ago by
Ram
43k • written 9.1 years ago by
rtliu
★ 2.2k
3
votes
1
reply
7.0k
views
Answer:
A: Trimmomatic not able to remove low sequence bases
9.1 years ago by
rtliu
★ 2.2k
3
votes
0
replies
3.4k
views
Answer:
A: script to check the size of given contig
9.2 years ago by
rtliu
★ 2.2k
1
vote
0
replies
5.1k
views
Answer:
Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
4
votes
0
replies
12k
views
Answer:
Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
4
votes
0
replies
11k
views
Answer:
Answer: what is the Hiseq 2000 adaptor sequences
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
3
votes
0
replies
12k
views
Answer:
Answer: NGS reads simulation
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
3
votes
1
reply
12k
views
Answer:
Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
1
vote
1
reply
4.9k
views
Answer:
Answer: Error correction in sequence Assembly
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
2
votes
0
replies
7.3k
views
Answer:
Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
0
votes
0
replies
6.3k
views
Answer:
Answer: Problems in use of seqtk subseq
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
7
votes
0
replies
70k
views
Answer:
Answer: combining fasta files
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.8k
views
Answer:
Answer: optical map & assembly
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
rtliu
★ 2.2k
1
vote
1
reply
12k
views
Answer:
Answer: Which Phred value to use in trimming
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
rtliu
★ 2.2k
3
votes
1
reply
3.4k
views
Answer:
Answer: The best factors to evaluate the quality of de novo transcriptome assembly
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
rtliu
★ 2.2k
2
votes
0
replies
3.0k
views
Answer:
Answer: The "perils" of using content from Biostars
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
0
votes
0
replies
3.9k
views
Answer:
Answer: converting a fasta database to blastp database
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
2
votes
0
replies
18k
views
Answer:
Answer: Trimmomatic not removing TruSeq3 adapters
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
0
votes
1
reply
4.9k
views
Answer:
Answer: De novo assembly for virus genome with Velvet.
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.9k
views
Answer:
Answer: How much computing resources does an ABySS run take
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
8
votes
1
reply
16k
views
Answer:
Answer: Best software to assemble bacterial genomes
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
1
vote
0
replies
4.6k
views
Answer:
Answer: memory requirments of velvet tool (de novo assembly)
updated 2.5 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
3
votes
1
reply
2.0k
views
Answer:
Answer: in-house blast DB creation
updated 2.5 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
2
votes
0
replies
3.5k
views
Answer:
Answer: Suggested genome assembly workshop
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
2
votes
1
reply
5.6k
views
Answer:
Answer: MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and
updated 2.4 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
11k
views
Answer:
Answer: scaffolds and contigs SPADES
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
rtliu
★ 2.2k
3
votes
0
replies
3.2k
views
Answer:
Answer: paired-reads assembly problem with so many contigs
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
rtliu
★ 2.2k
1
vote
0
replies
3.4k
views
Answer:
Answer: PacBio Technology Assemblers
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
rtliu
★ 2.2k
1
vote
0
replies
3.8k
views
Answer:
Answer: Mitochondrial denovo assembly
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
rtliu
★ 2.2k
2
votes
1
reply
5.0k
views
Answer:
A: What input does blastdb_aliastool need?
9.6 years ago by
rtliu
★ 2.2k
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