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3
votes
8
replies
6.6k
views
bedtools getfasta does not give a proper fasta output
fasta bedtools
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.5k
1
vote
3
replies
3.8k
views
How can we extract the alignment coordinates and gap coordinates in BLAT PSL?
Blat sequence-alignment
updated 3.4 years ago by 45k • written 10.5 years ago by ★ 1.5k
0
votes
0
replies
2.0k
views
Answer: A: Any pre-processing needed before annotate the transcripts?
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 1.5k
0
votes
0
replies
12k
views
Comment: C: Compare A Denovo Assembly To The Reference Genome
updated 5.9 years ago by 45k • written 11.8 years ago by ★ 1.5k
0
votes
0
replies
2.8k
views
Comment: C: Tool to do Variant calling from contigs data
7.3 years ago by Rohit ★ 1.5k
0
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0
replies
2.7k
views
Comment: C: How to use pacbio reads to join contigs
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
5.2k
views
Comment: C: short RNA reads alignment
7.4 years ago by Rohit ★ 1.5k
2
votes
1
reply
2.9k
views
Comment: C: Variant calling in genomic chunks
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.4k
views
Comment: C: Judging best assembly
7.4 years ago by Rohit ★ 1.5k
0
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0
replies
3.8k
views
Comment: C: k-mer optimization in Trinity
7.4 years ago by Rohit ★ 1.5k
1
vote
0
replies
3.4k
views
Answer: A: Judging best assembly
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
2.3k
views
Answer: A: Help with finding gene families in genome
7.4 years ago by Rohit ★ 1.5k
0
votes
2
replies
5.1k
views
Comment: C: How to combine multiple tools to detct SVs in WES data
7.5 years ago by Rohit ★ 1.5k
0
votes
1
reply
5.1k
views
Answer: A: How to combine multiple tools to detct SVs in WES data
7.5 years ago by Rohit ★ 1.5k
0
votes
1
reply
4.4k
views
Comment: C: bedtools closest - result for only the first query
7.5 years ago by Rohit ★ 1.5k
0
votes
1
reply
4.4k
views
Comment: C: bedtools closest - result for only the first query
7.5 years ago by Rohit ★ 1.5k
0
votes
0
replies
1.8k
views
Answer: A: Strategy for genome annotation for a new individual of a well-established specie
7.5 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.8k
views
Answer: A: help to do genome assembly
7.6 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.5k
views
Comment: C: How can I right align InDels ?
8.2 years ago by Rohit ★ 1.5k
1
vote
0
replies
6.4k
views
Comment: C: Assembling PacBio reads using a reference genome
8.2 years ago by Rohit ★ 1.5k
1
vote
0
replies
3.2k
views
Answer: C: empty SAM file
8.2 years ago by Rohit ★ 1.5k
0
votes
0
replies
4.3k
views
Comment: C: Closest gene to set of intervals
8.2 years ago by Rohit ★ 1.5k
0
votes
0
replies
4.1k
views
Comment: C: LASTZ does not accept/like "-" (dash) in Fasta file
8.2 years ago by Rohit ★ 1.5k
1
vote
0
replies
4.1k
views
Comment: C: LASTZ does not accept/like "-" (dash) in Fasta file
8.2 years ago by Rohit ★ 1.5k
0
votes
1
reply
4.3k
views
Answer: A: Closest gene to set of intervals
8.2 years ago by Rohit ★ 1.5k
0
votes
0
replies
4.2k
views
Comment: C: Help with finding introns
8.2 years ago by Rohit ★ 1.5k
0
votes
1
reply
4.2k
views
Comment: C: Help with finding introns
8.2 years ago by Rohit ★ 1.5k
1
vote
0
replies
3.6k
views
Comment: C: Gene lists and calculated Ka/Ks ratio per gene
8.2 years ago by Rohit ★ 1.5k
0
votes
0
replies
5.7k
views
Comment: C: trying to use gnu parallel and blast
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
17k
views
Comment: C: Twobittofa download and install link?
8.3 years ago by Rohit ★ 1.5k
0
votes
1
reply
2.7k
views
Comment: C: Streptococcus genome alignments
8.3 years ago by Rohit ★ 1.5k
0
votes
1
reply
5.7k
views
Comment: C: trying to use gnu parallel and blast
8.3 years ago by Rohit ★ 1.5k
2
votes
0
replies
1.6k
views
Comment: C: Obtain all ncDNA sequences using a GTF
8.3 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.4k
views
Answer: C: Need suggestions on transcriptome data
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.6k
views
Comment: C: Rescaffolding a genome assembly?
8.3 years ago by Rohit ★ 1.5k
1
vote
1
reply
3.6k
views
Comment: C: Rescaffolding a genome assembly?
8.3 years ago by Rohit ★ 1.5k
2
votes
0
replies
2.2k
views
Answer: A: Structural variants calling in a population
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
13k
views
Comment: C: Microrna Pipeline
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
2.0k
views
Answer: A: Finding fragemented transcriptome
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.4k
views
Answer: A: Calculate reads and paired inserts covering a junction
8.3 years ago by Rohit ★ 1.5k
2
votes
1
reply
3.2k
views
Answer: A: How to preform genome annotation?
8.3 years ago by Rohit ★ 1.5k
1
vote
0
replies
7.4k
views
Answer: A: How to perform bidirectional BLAST?
8.3 years ago by Rohit ★ 1.5k
2
votes
1
reply
7.1k
views
Answer: A: Preparation for Bioinformatics.SE closing
8.3 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.0k
views
Answer: A: Best ortholog/inparalog detection between human genes and species from different
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.9k
views
Comment: C: Getting avg gene length from GTF (for all splice isoforms)
8.3 years ago by Rohit ★ 1.5k
1
vote
1
reply
3.9k
views
Answer: C: Getting avg gene length from GTF (for all splice isoforms)
8.3 years ago by Rohit ★ 1.5k
0
votes
0
replies
5.9k
views
Comment: C: format uniprot fasta headers
8.4 years ago by Rohit ★ 1.5k
0
votes
1
reply
5.9k
views
Comment: C: format uniprot fasta headers
8.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.4k
views
Comment: C: Clustering PacBio CCS reads
8.4 years ago by Rohit ★ 1.5k
0
votes
1
reply
5.5k
views
Comment: C: Modification of fastq header
8.4 years ago by Rohit ★ 1.5k
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