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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
24 days ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
24 days ago by lcj34 ▴ 420
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1.6k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
27 days ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
4 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
4 weeks ago by lcj34 ▴ 420
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1.6k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
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1.6k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
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1.6k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
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1
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1.6k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
1
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0
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220
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Answer: Answer: adding new assemblies to previously built practical haplotype graph (v2)
5 weeks ago by lcj34 ▴ 420
1
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0
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675
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
6 weeks ago by lcj34 ▴ 420
1
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1
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675
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
6 weeks ago by lcj34 ▴ 420
0
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2
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675
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
6 weeks ago by lcj34 ▴ 420
0
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1
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675
views
Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
6 weeks ago by lcj34 ▴ 420
1
vote
1
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675
views
Answer: Answer: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
6 weeks ago by lcj34 ▴ 420
2
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0
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327
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Answer: Answer: how to add non-reference genes to BED file of intervals for PHG
6 weeks ago by lcj34 ▴ 420
0
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0
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441
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Comment: Comment: Practical Haplotype Graph
8 weeks ago by lcj34 ▴ 420
1
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1
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441
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Answer: Answer: Practical Haplotype Graph
8 weeks ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
2
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0
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316
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Answer: Answer: AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException
4 months ago by lcj34 ▴ 420
2
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1
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454
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Answer: Answer: PopulatePHGDBPipelinePlugin fails on example database
5 months ago by lcj34 ▴ 420
2
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1
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1.8k
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Answer: Answer: Practical Haplotype Graph Paths
5 months ago by lcj34 ▴ 420
0
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0
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386
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Answer: Answer: Unknown error using MAFToGVCF Plugin from practical haplotype graph (phg) and ta
6 months ago by lcj34 ▴ 420
0
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1
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458
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Answer: Answer: VCF file from PHG for loading into BreedBase
8 months ago by lcj34 ▴ 420
0
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0
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482
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Comment: Comment: Error occured at the PHG imputation step: allele in genotype not in the variant
10 months ago by lcj34 ▴ 420
0
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1
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869
views
Comment: Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
10 months ago by lcj34 ▴ 420
0
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1
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869
views
Comment: Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
10 months ago by lcj34 ▴ 420
0
votes
1
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869
views
Answer: Answer: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
11 months ago by lcj34 ▴ 420
1
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0
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1.0k
views
Answer: Answer: Expected number of haplotype IDs per path in PHG
11 months ago by lcj34 ▴ 420
0
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0
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414
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Comment: Comment: PHG - Error in encodePathArrayFromSet()
11 months ago by lcj34 ▴ 420
0
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0
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1.0k
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Comment: Comment: Expected number of haplotype IDs per path in PHG
12 months ago by lcj34 ▴ 420
0
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1
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1.0k
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Comment: Comment: Expected number of haplotype IDs per path in PHG
12 months ago by lcj34 ▴ 420
0
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1
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1.0k
views
Comment: Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin?
13 months ago by lcj34 ▴ 420
0
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0
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927
views
Answer: Answer: Practical Haplotype Graph -- Pathing Error
13 months ago by lcj34 ▴ 420
0
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1
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1.1k
views
Answer: Answer: PHG -imputeTarget pathToVCF plugin not writing expected output files?
13 months ago by lcj34 ▴ 420
0
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0
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927
views
Comment: Comment: Practical Haplotype Graph -- Pathing Error
13 months ago by lcj34 ▴ 420
0
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0
replies
1.0k
views
Answer: Answer: PHG Load haplotype and create consensus
14 months ago by lcj34 ▴ 420
0
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1
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1.4k
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Comment: Comment: Can PHG handle spanning deletions in GVCF genotypes?
14 months ago by lcj34 ▴ 420
0
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1
reply
927
views
Comment: Comment: Practical Haplotype Graph -- Pathing Error
14 months ago by lcj34 ▴ 420
1
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0
replies
2.4k
views
Comment: Comment: Practical Haplotype Graph Consensus and Imputation Specifications
14 months ago by lcj34 ▴ 420
1
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1
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669
views
Answer: Answer: Incorrect gvcfServerPath for reference genome
updated 14 months ago by 141k • written 14 months ago by ▴ 420
1
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1
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1.8k
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Comment: Comment: imputing haplotypes from variants in a VCF file - vcfIndexFile
14 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
14 months ago by lcj34 ▴ 420
0
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1
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2.4k
views
Comment: Comment: Practical Haplotype Graph Consensus and Imputation Specifications
14 months ago by lcj34 ▴ 420
1
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0
replies
1.3k
views
Comment: Comment: No localGVCFFolder parameter in config file - problem passing parameter to pipel
14 months ago by lcj34 ▴ 420
1
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1
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1.3k
views
Comment: Comment: No localGVCFFolder parameter in config file - problem passing parameter to pipel
14 months ago by lcj34 ▴ 420
1
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1
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844
views
Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
14 months ago by lcj34 ▴ 420
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