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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
5 weeks ago by lcj34 ▴ 420
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1.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
6 weeks ago by lcj34 ▴ 420
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1.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
6 weeks ago by lcj34 ▴ 420
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1.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
6 weeks ago by lcj34 ▴ 420
1
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1
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1.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
6 weeks ago by lcj34 ▴ 420
0
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1
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1.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
6 weeks ago by lcj34 ▴ 420
0
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1
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1.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
6 weeks ago by lcj34 ▴ 420
1
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0
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226
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Answer: Answer: adding new assemblies to previously built practical haplotype graph (v2)
6 weeks ago by lcj34 ▴ 420
1
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0
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705
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
7 weeks ago by lcj34 ▴ 420
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705
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
7 weeks ago by lcj34 ▴ 420
0
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2
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705
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
7 weeks ago by lcj34 ▴ 420
0
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1
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705
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
7 weeks ago by lcj34 ▴ 420
1
vote
1
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705
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Answer: Answer: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
7 weeks ago by lcj34 ▴ 420
2
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0
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339
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Answer: Answer: how to add non-reference genes to BED file of intervals for PHG
8 weeks ago by lcj34 ▴ 420
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0
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465
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Comment: Comment: Practical Haplotype Graph
9 weeks ago by lcj34 ▴ 420
1
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1
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465
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Answer: Answer: Practical Haplotype Graph
9 weeks ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
3 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Comment: Comment: Practical Haplotype Graph Paths
4 months ago by lcj34 ▴ 420
2
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0
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324
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Answer: Answer: AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException
5 months ago by lcj34 ▴ 420
2
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1
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466
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Answer: Answer: PopulatePHGDBPipelinePlugin fails on example database
5 months ago by lcj34 ▴ 420
2
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1
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1.8k
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Answer: Answer: Practical Haplotype Graph Paths
5 months ago by lcj34 ▴ 420
0
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0
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392
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Answer: Answer: Unknown error using MAFToGVCF Plugin from practical haplotype graph (phg) and ta
6 months ago by lcj34 ▴ 420
0
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1
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470
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Answer: Answer: VCF file from PHG for loading into BreedBase
9 months ago by lcj34 ▴ 420
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0
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492
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Comment: Comment: Error occured at the PHG imputation step: allele in genotype not in the variant
11 months ago by lcj34 ▴ 420
0
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1
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892
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Comment: Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
11 months ago by lcj34 ▴ 420
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1
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892
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Comment: Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
11 months ago by lcj34 ▴ 420
0
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1
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892
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Answer: Answer: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
11 months ago by lcj34 ▴ 420
1
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0
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1.0k
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Answer: Answer: Expected number of haplotype IDs per path in PHG
11 months ago by lcj34 ▴ 420
0
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0
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425
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Comment: Comment: PHG - Error in encodePathArrayFromSet()
12 months ago by lcj34 ▴ 420
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0
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1.0k
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Comment: Comment: Expected number of haplotype IDs per path in PHG
12 months ago by lcj34 ▴ 420
0
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1
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1.0k
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Comment: Comment: Expected number of haplotype IDs per path in PHG
12 months ago by lcj34 ▴ 420
0
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1
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1.1k
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Comment: Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin?
13 months ago by lcj34 ▴ 420
0
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0
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937
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Answer: Answer: Practical Haplotype Graph -- Pathing Error
13 months ago by lcj34 ▴ 420
0
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1
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1.1k
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Answer: Answer: PHG -imputeTarget pathToVCF plugin not writing expected output files?
14 months ago by lcj34 ▴ 420
0
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0
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937
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Comment: Comment: Practical Haplotype Graph -- Pathing Error
14 months ago by lcj34 ▴ 420
0
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0
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1.1k
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Answer: Answer: PHG Load haplotype and create consensus
14 months ago by lcj34 ▴ 420
0
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1
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1.4k
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Comment: Comment: Can PHG handle spanning deletions in GVCF genotypes?
14 months ago by lcj34 ▴ 420
0
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1
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937
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Comment: Comment: Practical Haplotype Graph -- Pathing Error
14 months ago by lcj34 ▴ 420
1
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0
replies
2.4k
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Comment: Comment: Practical Haplotype Graph Consensus and Imputation Specifications
14 months ago by lcj34 ▴ 420
1
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1
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678
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Answer: Answer: Incorrect gvcfServerPath for reference genome
updated 14 months ago by 142k • written 14 months ago by ▴ 420
1
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1
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1.8k
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Comment: Comment: imputing haplotypes from variants in a VCF file - vcfIndexFile
14 months ago by lcj34 ▴ 420
1
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1
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1.8k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
14 months ago by lcj34 ▴ 420
0
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1
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2.4k
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Comment: Comment: Practical Haplotype Graph Consensus and Imputation Specifications
14 months ago by lcj34 ▴ 420
1
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0
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1.3k
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Comment: Comment: No localGVCFFolder parameter in config file - problem passing parameter to pipel
14 months ago by lcj34 ▴ 420
1
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1
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1.3k
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Comment: Comment: No localGVCFFolder parameter in config file - problem passing parameter to pipel
14 months ago by lcj34 ▴ 420
1
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1
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855
views
Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
14 months ago by lcj34 ▴ 420
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