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Answer: Answer: adding new assemblies to previously built practical haplotype graph (v2)
6 weeks ago by lcj34 ▴ 420
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701
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Answer: Answer: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
7 weeks ago by lcj34 ▴ 420
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338
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Answer: Answer: how to add non-reference genes to BED file of intervals for PHG
8 weeks ago by lcj34 ▴ 420
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463
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Answer: Answer: Practical Haplotype Graph
9 weeks ago by lcj34 ▴ 420
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324
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Answer: Answer: AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException
5 months ago by lcj34 ▴ 420
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464
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Answer: Answer: PopulatePHGDBPipelinePlugin fails on example database
5 months ago by lcj34 ▴ 420
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1.8k
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Answer: Answer: Practical Haplotype Graph Paths
5 months ago by lcj34 ▴ 420
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391
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Answer: Answer: Unknown error using MAFToGVCF Plugin from practical haplotype graph (phg) and ta
6 months ago by lcj34 ▴ 420
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1
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469
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Answer: Answer: VCF file from PHG for loading into BreedBase
9 months ago by lcj34 ▴ 420
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1
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890
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Answer: Answer: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
11 months ago by lcj34 ▴ 420
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1.0k
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Answer: Answer: Expected number of haplotype IDs per path in PHG
11 months ago by lcj34 ▴ 420
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937
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Answer: Answer: Practical Haplotype Graph -- Pathing Error
13 months ago by lcj34 ▴ 420
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1.1k
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Answer: Answer: PHG -imputeTarget pathToVCF plugin not writing expected output files?
14 months ago by lcj34 ▴ 420
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1.1k
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Answer: Answer: PHG Load haplotype and create consensus
14 months ago by lcj34 ▴ 420
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1
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678
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Answer: Answer: Incorrect gvcfServerPath for reference genome
updated 14 months ago by 142k • written 14 months ago by ▴ 420
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1.8k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
14 months ago by lcj34 ▴ 420
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854
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Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
14 months ago by lcj34 ▴ 420
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854
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Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
14 months ago by lcj34 ▴ 420
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1
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1.8k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
15 months ago by lcj34 ▴ 420
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1
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1.3k
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Answer: Answer: No localGVCFFolder parameter in config file - problem passing parameter to pipel
15 months ago by lcj34 ▴ 420
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1
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1.1k
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Answer: Answer: PHG Load haplotype and create consensus
15 months ago by lcj34 ▴ 420
1
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1
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865
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Answer: Answer: PHG database building for very large genomes
16 months ago by lcj34 ▴ 420
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2.4k
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Answer: Answer: Practical Haplotype Graph Consensus and Imputation Specifications
16 months ago by lcj34 ▴ 420
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521
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Answer: Answer: Empty intervals file while loading BAMs into PHG
18 months ago by lcj34 ▴ 420
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595
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Answer: Answer: PHG createHaplotypeNodes killed
19 months ago by lcj34 ▴ 420
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1.2k
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Answer: Answer: PHG: liquibase faillures when trying to run the imputation pipeline
2.1 years ago by lcj34 ▴ 420
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1
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1.2k
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Answer: Answer: PHG: liquibase faillures when trying to run the imputation pipeline
2.1 years ago by lcj34 ▴ 420
1
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1
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632
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Answer: Answer: Practical Haplotype Graph Docker images pull down and creating a simple example
2.1 years ago by lcj34 ▴ 420
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1
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652
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Answer: Answer: AssemblyHaplotypesMultiThreadPlugin fails
2.6 years ago by lcj34 ▴ 420
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1
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1.1k
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Answer: A: GetHapIdsForTaxonPlugin method question
3.4 years ago by lcj34 ▴ 420
2
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0
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881
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Answer: A: PHG v0.0.23 (latest) LoadHaplotypesFromGVCFPlugin fails, but v0.0.22 with same s
3.5 years ago by lcj34 ▴ 420
2
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0
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881
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Answer: A: PHG v0.0.23 (latest) LoadHaplotypesFromGVCFPlugin fails, but v0.0.22 with same s
3.5 years ago by lcj34 ▴ 420
4
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1
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1.0k
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Answer: A: PHG ImputePipelinePlugin `liquibaseDir` and `skipLiquibaseCheck` hardcoded vari
3.7 years ago by lcj34 ▴ 420
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