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Answer: Answer: adding new assemblies to previously built practical haplotype graph (v2)
8 weeks ago by lcj34 ▴ 420
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739
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Answer: Answer: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
9 weeks ago by lcj34 ▴ 420
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358
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Answer: Answer: how to add non-reference genes to BED file of intervals for PHG
10 weeks ago by lcj34 ▴ 420
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489
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Answer: Answer: Practical Haplotype Graph
11 weeks ago by lcj34 ▴ 420
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334
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Answer: Answer: AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException
5 months ago by lcj34 ▴ 420
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481
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Answer: Answer: PopulatePHGDBPipelinePlugin fails on example database
6 months ago by lcj34 ▴ 420
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1.9k
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Answer: Answer: Practical Haplotype Graph Paths
6 months ago by lcj34 ▴ 420
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400
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Answer: Answer: Unknown error using MAFToGVCF Plugin from practical haplotype graph (phg) and ta
7 months ago by lcj34 ▴ 420
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1
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479
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Answer: Answer: VCF file from PHG for loading into BreedBase
9 months ago by lcj34 ▴ 420
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1
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910
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Answer: Answer: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
11 months ago by lcj34 ▴ 420
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1.0k
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Answer: Answer: Expected number of haplotype IDs per path in PHG
11 months ago by lcj34 ▴ 420
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948
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Answer: Answer: Practical Haplotype Graph -- Pathing Error
14 months ago by lcj34 ▴ 420
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1.1k
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Answer: Answer: PHG -imputeTarget pathToVCF plugin not writing expected output files?
14 months ago by lcj34 ▴ 420
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1.1k
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Answer: Answer: PHG Load haplotype and create consensus
14 months ago by lcj34 ▴ 420
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1
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689
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Answer: Answer: Incorrect gvcfServerPath for reference genome
updated 15 months ago by 142k • written 15 months ago by ▴ 420
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1.9k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
15 months ago by lcj34 ▴ 420
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866
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Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
15 months ago by lcj34 ▴ 420
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1
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866
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Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
15 months ago by lcj34 ▴ 420
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1
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1.9k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
15 months ago by lcj34 ▴ 420
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1
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1.3k
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Answer: Answer: No localGVCFFolder parameter in config file - problem passing parameter to pipel
15 months ago by lcj34 ▴ 420
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1
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1.1k
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Answer: Answer: PHG Load haplotype and create consensus
15 months ago by lcj34 ▴ 420
1
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1
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884
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Answer: Answer: PHG database building for very large genomes
17 months ago by lcj34 ▴ 420
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1
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2.4k
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Answer: Answer: Practical Haplotype Graph Consensus and Imputation Specifications
17 months ago by lcj34 ▴ 420
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531
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Answer: Answer: Empty intervals file while loading BAMs into PHG
18 months ago by lcj34 ▴ 420
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0
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601
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Answer: Answer: PHG createHaplotypeNodes killed
20 months ago by lcj34 ▴ 420
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1.2k
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Answer: Answer: PHG: liquibase faillures when trying to run the imputation pipeline
2.1 years ago by lcj34 ▴ 420
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1
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1.2k
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Answer: Answer: PHG: liquibase faillures when trying to run the imputation pipeline
2.1 years ago by lcj34 ▴ 420
1
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1
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642
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Answer: Answer: Practical Haplotype Graph Docker images pull down and creating a simple example
2.1 years ago by lcj34 ▴ 420
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1
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660
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Answer: Answer: AssemblyHaplotypesMultiThreadPlugin fails
2.7 years ago by lcj34 ▴ 420
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1
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1.2k
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Answer: A: GetHapIdsForTaxonPlugin method question
3.5 years ago by lcj34 ▴ 420
2
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0
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889
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Answer: A: PHG v0.0.23 (latest) LoadHaplotypesFromGVCFPlugin fails, but v0.0.22 with same s
3.5 years ago by lcj34 ▴ 420
2
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0
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889
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Answer: A: PHG v0.0.23 (latest) LoadHaplotypesFromGVCFPlugin fails, but v0.0.22 with same s
3.5 years ago by lcj34 ▴ 420
4
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1
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1.0k
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Answer: A: PHG ImputePipelinePlugin `liquibaseDir` and `skipLiquibaseCheck` hardcoded vari
3.7 years ago by lcj34 ▴ 420
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