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Comment: Comment: Combining RNAseq datasets
14 months ago by rpolicastro 13k
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Comment: Comment: Languages for Bioinformatics
14 months ago by rpolicastro 13k
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625
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Comment: Comment: A way to find which genome builds a package supports
14 months ago by rpolicastro 13k
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605
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Comment: Comment: calculating down-regulated and upregulated genes from a set of values
14 months ago by rpolicastro 13k
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605
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Comment: Comment: calculating down-regulated and upregulated genes from a set of values
14 months ago by rpolicastro 13k
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1
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928
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Comment: Comment: Between sample normalization with replicates
14 months ago by rpolicastro 13k
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597
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Comment: Comment: Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
14 months ago by rpolicastro 13k
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922
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Comment: Comment: How to make line graph with circles in R
14 months ago by rpolicastro 13k
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1.6k
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Comment: Comment: How to convert hard-masked genome to soft-masked?
14 months ago by rpolicastro 13k
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635
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Comment: Comment: Aggregating multiple 10 X samples count matrices into one before analysis.
14 months ago by rpolicastro 13k
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1.6k
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Comment: Comment: WGCNA number of modules issue
14 months ago by rpolicastro 13k
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1.1k
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Comment: Comment: WGCNA goodGenes message error
14 months ago by rpolicastro 13k
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1.4k
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Comment: Comment: General approach for unsupervised clustering of bulk RNAseq samples and deriving
15 months ago by rpolicastro 13k
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737
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Comment: Comment: Size of two scRNA-Seq conditions
15 months ago by rpolicastro 13k
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1
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737
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Comment: Comment: Size of two scRNA-Seq conditions
15 months ago by rpolicastro 13k
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1.0k
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Comment: Comment: WGCNA gene selection: gene significance or LASSO?
15 months ago by rpolicastro 13k
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571
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Comment: Comment: Single-cell RNA seq for bovine
16 months ago by rpolicastro 13k
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1.0k
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Comment: Comment: min.cells in CreateSeuratObject
16 months ago by rpolicastro 13k
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1.4k
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Comment: Comment: Make large matrix data interpretable. How?
16 months ago by rpolicastro 13k
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942
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Comment: Comment: how to loop through various dataframes in R
16 months ago by rpolicastro 13k
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522
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Comment: Comment: Differentiate samples in linear regression
16 months ago by rpolicastro 13k
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1
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583
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Comment: Comment: Is it possible to create gene enrichment plot for wild type (only one type of sa
17 months ago by rpolicastro 13k
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2
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1.0k
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Comment: Comment: Filter only overlapping portion of read pairs?
17 months ago by rpolicastro 13k
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1
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2.0k
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Comment: Comment: find the mate of a read using pysam
17 months ago by rpolicastro 13k
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1
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751
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Comment: Comment: Combining multiple datasets increases the fgsea p-value
17 months ago by rpolicastro 13k
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1.4k
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Comment: Comment: Adding lfcShrink to DESeq2 analysis
17 months ago by rpolicastro 13k
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773
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Comment: Comment: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
17 months ago by rpolicastro 13k
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742
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Comment: Comment: Non-adjusted p-value used in publication
17 months ago by rpolicastro 13k
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523
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Comment: Comment: DESeq2 with multiple conditional data
17 months ago by rpolicastro 13k
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650
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Comment: Comment: Statistic analysis on overlap between RNA-seq and ChIP-seq dataset
17 months ago by rpolicastro 13k
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1
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2.0k
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Comment: Comment: Mean read length from bam file
17 months ago by rpolicastro 13k
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2.0k
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Comment: Comment: Mean read length from bam file
17 months ago by rpolicastro 13k
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2.0k
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Comment: Comment: Mean read length from bam file
17 months ago by rpolicastro 13k
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1
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1.3k
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Comment: Comment: Box plots with logFC values
17 months ago by rpolicastro 13k
2
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1
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871
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Comment: Comment: Doubt on annotation of ensembl ids in biomart using R
18 months ago by rpolicastro 13k
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834
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Comment: Comment: featureCounts strandedness option
18 months ago by rpolicastro 13k
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1
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858
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Comment: Comment: Evaluating RNASeq counts distribution
18 months ago by rpolicastro 13k
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510
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Comment: Comment: convert raw count to seurat object
18 months ago by rpolicastro 13k
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472
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Comment: Comment: Fastq
18 months ago by rpolicastro 13k
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1
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873
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Comment: Comment: seurat probelm
18 months ago by rpolicastro 13k
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1
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2.8k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
18 months ago by rpolicastro 13k
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1
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588
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Comment: Comment: Seeking assistance in scRNA Seq
18 months ago by rpolicastro 13k
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1
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1.2k
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Comment: Comment: Exporting NMDS distance matrix as csv in R
18 months ago by rpolicastro 13k
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1.7k
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Comment: Comment: From Seurat object to a dataframe
18 months ago by rpolicastro 13k
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549
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Comment: Comment: Adjusting batch effects for known cell types and applying this transformation to
18 months ago by rpolicastro 13k
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1
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1.1k
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Comment: Comment: NAs using org.Hs.eg.db for Ensembl ID to Gene Symbol annotation
18 months ago by rpolicastro 13k
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1.1k
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Comment: Comment: extracting gene names from clusterProfiler following gseGO
18 months ago by rpolicastro 13k
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1.7k
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Comment: Comment: Seurat installation errors (configure: error: geos-config not found or not execu
18 months ago by rpolicastro 13k
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2.8k
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Comment: Comment: CreateSeuratObject problem
18 months ago by rpolicastro 13k
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925
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Comment: Comment: Trouble using Bioconda packages (lima, isoseq3) with channel conda-forge
18 months ago by rpolicastro 13k
976 results • Page 4 of 20
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