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243
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Comment: Comment: Plot heatmap using row_splitting but splitting should based on a column in data
9 hours ago by rpolicastro 11k
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243
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Comment: Comment: Plot heatmap using row_splitting but splitting should based on a column in data
11 hours ago by rpolicastro 11k
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1
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611
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Comment: Comment: Bad quality fastq files for analysis
3 days ago by rpolicastro 11k
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172
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Comment: Comment: Combining RNAseq datasets
5 days ago by rpolicastro 11k
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375
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Comment: Comment: Languages for Bioinformatics
11 days ago by rpolicastro 11k
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336
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Comment: Comment: A way to find which genome builds a package supports
11 days ago by rpolicastro 11k
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253
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Comment: Comment: calculating down-regulated and upregulated genes from a set of values
11 days ago by rpolicastro 11k
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1
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253
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Comment: Comment: calculating down-regulated and upregulated genes from a set of values
12 days ago by rpolicastro 11k
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1
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317
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Comment: Comment: Between sample normalization with replicates
12 days ago by rpolicastro 11k
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230
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Comment: Comment: Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
12 days ago by rpolicastro 11k
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242
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Comment: Comment: How to make line graph with circles in R
13 days ago by rpolicastro 11k
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374
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Comment: Comment: How to convert hard-masked genome to soft-masked?
14 days ago by rpolicastro 11k
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374
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Answer: Answer: How to convert hard-masked genome to soft-masked?
15 days ago by rpolicastro 11k
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174
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Comment: Comment: Aggregating multiple 10 X samples count matrices into one before analysis.
15 days ago by rpolicastro 11k
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323
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Comment: Comment: WGCNA number of modules issue
16 days ago by rpolicastro 11k
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413
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Comment: Comment: WGCNA goodGenes message error
20 days ago by rpolicastro 11k
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1
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534
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Comment: Comment: General approach for unsupervised clustering of bulk RNAseq samples and deriving
6 weeks ago by rpolicastro 11k
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1
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378
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Comment: Comment: Size of two scRNA-Seq conditions
6 weeks ago by rpolicastro 11k
2
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1
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378
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Comment: Comment: Size of two scRNA-Seq conditions
6 weeks ago by rpolicastro 11k
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0
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283
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Comment: Comment: WGCNA gene selection: gene significance or LASSO?
6 weeks ago by rpolicastro 11k
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1
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307
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Comment: Comment: Single-cell RNA seq for bovine
8 weeks ago by rpolicastro 11k
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220
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Answer: Answer: How to swap fasta entrys in a fasta file?
8 weeks ago by rpolicastro 11k
1
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0
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273
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Comment: Comment: min.cells in CreateSeuratObject
8 weeks ago by rpolicastro 11k
2
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1
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280
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Answer: Answer: Create single cell reference for MuSIC
9 weeks ago by rpolicastro 11k
2
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1
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395
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Answer: Answer: How to perform scRNA seq analysis?
10 weeks ago by rpolicastro 11k
2
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0
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817
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Comment: Comment: Make large matrix data interpretable. How?
11 weeks ago by rpolicastro 11k
3
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528
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Comment: Comment: how to loop through various dataframes in R
11 weeks ago by rpolicastro 11k
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0
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336
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Comment: Comment: Differentiate samples in linear regression
11 weeks ago by rpolicastro 11k
1
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1
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329
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Comment: Comment: Is it possible to create gene enrichment plot for wild type (only one type of sa
3 months ago by rpolicastro 11k
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2
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594
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Comment: Comment: Filter only overlapping portion of read pairs?
3 months ago by rpolicastro 11k
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1
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600
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Comment: Comment: find the mate of a read using pysam
3 months ago by rpolicastro 11k
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0
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425
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Job: Senior Research Associate/Scientist, Computational Biology
job
3 months ago by rpolicastro 11k
0
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1
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412
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Comment: Comment: Combining multiple datasets increases the fgsea p-value
3 months ago by rpolicastro 11k
2
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0
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401
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Comment: Comment: Adding lfcShrink to DESeq2 analysis
3 months ago by rpolicastro 11k
1
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0
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413
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Comment: Comment: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
3 months ago by rpolicastro 11k
3
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402
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Comment: Comment: Non-adjusted p-value used in publication
3 months ago by rpolicastro 11k
1
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269
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Comment: Comment: DESeq2 with multiple conditional data
3 months ago by rpolicastro 11k
1
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0
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273
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Comment: Comment: Statistic analysis on overlap between RNA-seq and ChIP-seq dataset
3 months ago by rpolicastro 11k
0
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1
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794
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Comment: Comment: Mean read length from bam file
3 months ago by rpolicastro 11k
1
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0
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794
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Comment: Comment: Mean read length from bam file
3 months ago by rpolicastro 11k
1
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2
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794
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Comment: Comment: Mean read length from bam file
3 months ago by rpolicastro 11k
3
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2
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346
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Answer: Answer: subsetting a data frame that has rows with values in more than one column in R
3 months ago by rpolicastro 11k
0
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1
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586
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Comment: Comment: Box plots with logFC values
3 months ago by rpolicastro 11k
2
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1
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462
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Comment: Comment: Doubt on annotation of ensembl ids in biomart using R
3 months ago by rpolicastro 11k
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0
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200
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Answer: Answer: STAR Alignment
updated 4 months ago by 38k • written 4 months ago by 11k
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346
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Comment: Comment: featureCounts strandedness option
4 months ago by rpolicastro 11k
1
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1
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416
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Comment: Comment: Evaluating RNASeq counts distribution
4 months ago by rpolicastro 11k
0
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1
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668
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Answer: Answer: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
4 months ago by rpolicastro 11k
0
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0
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227
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Comment: Comment: convert raw count to seurat object
4 months ago by rpolicastro 11k
1
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1
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282
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Answer: Answer: I would like to add a tag to all my fasta files
4 months ago by rpolicastro 11k
1,165 results • Page 1 of 24
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