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Comment: C: How to get all variants in original BAM file with HaplotypeCaller? (No correctio
7.2 years ago by Devon Ryan 105k
1
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Comment: C: Plot LFC with pheatmap of differentially expressed gene list from DESeq2.
7.2 years ago by Devon Ryan 105k
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3.7k
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Comment: C: Issue with DESeq2: Unable to create a DESeqDataSet because names in colData don'
7.2 years ago by Devon Ryan 105k
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2.7k
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Answer: A: Can you get mpileup to report positions with coverage of 0?
7.2 years ago by Devon Ryan 105k
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3.6k
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Comment: C: What if a network is not scale-free?
7.2 years ago by Devon Ryan 105k
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8.0k
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Comment: C: Editing Bed file
7.2 years ago by Devon Ryan 105k
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1
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3.7k
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Comment: C: Issue with DESeq2: Unable to create a DESeqDataSet because names in colData don'
7.2 years ago by Devon Ryan 105k
1
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6.6k
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Answer: A: Plot LFC with pheatmap of differentially expressed gene list from DESeq2.
7.2 years ago by Devon Ryan 105k
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2.4k
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Comment: C: Normalize coverage to spike-in chromatin
7.2 years ago by Devon Ryan 105k
1
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2.4k
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Answer: A: Normalize coverage to spike-in chromatin
7.2 years ago by Devon Ryan 105k
3
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8.5k
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Answer: A: Deeptools plotHeatmap: too much black! missing data assigned incorrectly
7.2 years ago by Devon Ryan 105k
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8.5k
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Comment: C: Deeptools plotHeatmap: too much black! missing data assigned incorrectly
7.2 years ago by Devon Ryan 105k
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1
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1.4k
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Comment: C: microbial RNA seq
7.2 years ago by Devon Ryan 105k
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2.9k
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Comment: C: DNAseq pipeline steps
7.2 years ago by Devon Ryan 105k
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6.8k
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Comment: C: unmapped reads in paired-end run pf bowtie2
7.2 years ago by Devon Ryan 105k
2
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1.5k
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Answer: A: RNA-seq edgeR normalization
7.2 years ago by Devon Ryan 105k
1
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3.5k
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Comment: C: Best Software for analysis of Hi-C data
7.2 years ago by Devon Ryan 105k
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4.2k
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Answer: A: difference between mapq=0 and samtools flag 0x900
7.2 years ago by Devon Ryan 105k
2
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1.5k
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Answer: A: Normalised counts of control samples in gene expression matrix
7.2 years ago by Devon Ryan 105k
3
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1
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1.2k
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Answer: A: Selection of RNA-Seq appropriate tools for meta-analysis
7.2 years ago by Devon Ryan 105k
1
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2
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6.8k
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Answer: A: unmapped reads in paired-end run pf bowtie2
7.3 years ago by Devon Ryan 105k
1
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0
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2.4k
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Comment: C: have trouble to upload data to washU browser
7.3 years ago by Devon Ryan 105k
1
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1
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2.4k
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Comment: C: have trouble to upload data to washU browser
7.3 years ago by Devon Ryan 105k
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3.8k
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Comment: C: Can someone explain what the -M option in BWA-MEM does?
7.3 years ago by Devon Ryan 105k
3
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3.8k
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Answer: A: Can someone explain what the -M option in BWA-MEM does?
7.3 years ago by Devon Ryan 105k
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5.8k
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Comment: C: BigWig from ensembl assembly to UCSC session
7.3 years ago by Devon Ryan 105k
5
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5.8k
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Answer: A: BigWig from ensembl assembly to UCSC session
7.3 years ago by Devon Ryan 105k
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4.5k
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Comment: C: Total CpG genome count
7.3 years ago by Devon Ryan 105k
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3.9k
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Comment: C: Programming interview via Skype
7.3 years ago by Devon Ryan 105k
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1
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6.8k
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Comment: C: unmapped reads in paired-end run pf bowtie2
7.3 years ago by Devon Ryan 105k
2
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3.3k
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Comment: C: Issue with reverting bam file back to fastq files
7.3 years ago by Devon Ryan 105k
2
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1
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3.2k
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Answer: A: Is it correct if we use htseq counts as raw read counts in DESEq2?
7.3 years ago by Devon Ryan 105k
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3.2k
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Comment: C: Is it correct if we use htseq counts as raw read counts in DESEq2?
7.3 years ago by Devon Ryan 105k
2
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1
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3.5k
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Answer: A: Best Software for analysis of Hi-C data
7.3 years ago by Devon Ryan 105k
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3.8k
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Comment: C: The best way to produce gene body coverage
7.3 years ago by Devon Ryan 105k
0
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3.2k
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Answer: A: GATK3 error message
7.3 years ago by Devon Ryan 105k
2
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8.9k
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Comment: C: Sequence Length Distribution after trimmomatic
7.3 years ago by Devon Ryan 105k
5
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3.3k
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Answer: A: Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
7.3 years ago by Devon Ryan 105k
4
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1
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7.9k
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Answer: A: What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms
7.3 years ago by Devon Ryan 105k
0
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1
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3.4k
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Comment: C: qPCR: Huge variation in fold change of genes between biological replicates
7.3 years ago by Devon Ryan 105k
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1
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2.3k
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Comment: C: EdgeR generic design matrix
7.3 years ago by Devon Ryan 105k
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1
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2.3k
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Answer: A: EdgeR generic design matrix
7.3 years ago by Devon Ryan 105k
7
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1
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5.6k
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Comment: C: Can we concatenate two fastq files from same sample but different runs
7.3 years ago by Devon Ryan 105k
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2.0k
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Comment: C: Volcano plot for mean fluorescence intensity (flow cytometry) data
7.3 years ago by Devon Ryan 105k
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0
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2.2k
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Answer: A: how to get read density for the first 1000 nt of each transcript
7.3 years ago by Devon Ryan 105k
3
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1.8k
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Comment: C: Applying a function to a matrix
7.3 years ago by Devon Ryan 105k
3
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4.4k
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Answer: A: DiffBind - normalization methods with biologically-relevant differences in signa
7.3 years ago by Devon Ryan 105k
1
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40k
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Comment: C: How is the design in DESeq2 work?
7.3 years ago by Devon Ryan 105k
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1
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6.1k
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Comment: C: bcl2fastq is interpreting my experiment folder structure incorrectly as MiSeq-st
7.3 years ago by Devon Ryan 105k
1
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5.2k
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Answer: A: Mean Reads Per Cell (SCrna Seq)
7.3 years ago by Devon Ryan 105k
10,053 results • Page 30 of 202
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