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3
votes
1
reply
5.1k
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Answer: C: Bowtie2 mapping of (several, long) contigs in fasta to a reference sequence - co
8.3 years ago by Devon Ryan 105k
1
vote
0
replies
2.7k
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Answer: A: Coverage and fragment length
8.3 years ago by Devon Ryan 105k
0
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0
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1.1k
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Comment: C: Chip-Seq data description
8.3 years ago by Devon Ryan 105k
0
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0
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12k
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Comment: C: demultiplex a dataset when you have barcodes as a separate fastq
8.3 years ago by Devon Ryan 105k
3
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1
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12k
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Comment: C: demultiplex a dataset when you have barcodes as a separate fastq
8.3 years ago by Devon Ryan 105k
1
vote
0
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2.5k
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Answer: A: wrong bam file format
8.3 years ago by Devon Ryan 105k
5
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2
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3.3k
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Answer: A: correlation between genes
8.3 years ago by Devon Ryan 105k
0
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0
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7.4k
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Comment: C: Gene expression data set scaling
8.3 years ago by Devon Ryan 105k
3
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2
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7.4k
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Answer: A: Gene expression data set scaling
8.3 years ago by Devon Ryan 105k
1
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0
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2.2k
views
Answer: A: DeSeq2 for time point analysis? And what is the best way to handle technical rep
8.3 years ago by Devon Ryan 105k
3
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1
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1.9k
views
Answer: A: Parsing BAM to genome feature
8.4 years ago by Devon Ryan 105k
1
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0
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5.3k
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Answer: A: Extract positions covered by a given read from Bam file
8.4 years ago by Devon Ryan 105k
0
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1
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2.6k
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Comment: C: behaviour of bowtie compared to junction aligners?
8.4 years ago by Devon Ryan 105k
0
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1
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2.6k
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Comment: C: behaviour of bowtie compared to junction aligners?
8.4 years ago by Devon Ryan 105k
1
vote
1
reply
2.6k
views
Answer: A: behaviour of bowtie compared to junction aligners?
8.4 years ago by Devon Ryan 105k
0
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0
replies
13k
views
Comment: C: Download SAM/BAM files from SRA takes ages!!!
8.4 years ago by Devon Ryan 105k
0
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1
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13k
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Comment: C: Download SAM/BAM files from SRA takes ages!!!
8.4 years ago by Devon Ryan 105k
0
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1
reply
1.9k
views
Comment: C: What does it mean to have more than 1 gene/protein associated with one node in a
8.4 years ago by Devon Ryan 105k
0
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1
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1.9k
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Answer: A: What does it mean to have more than 1 gene/protein associated with one node in a
8.4 years ago by Devon Ryan 105k
0
votes
1
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3.4k
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Comment: C: wig file from fasta
8.4 years ago by Devon Ryan 105k
0
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1
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3.4k
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Comment: C: wig file from fasta
8.4 years ago by Devon Ryan 105k
3
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1
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2.9k
views
Answer: A: Mapping Quality of reads with mismatches in STAR
8.4 years ago by Devon Ryan 105k
0
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0
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3.4k
views
Answer: A: wig file from fasta
8.4 years ago by Devon Ryan 105k
3
votes
1
reply
19k
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Answer: A: Is 'hg19' the same as 'Human Genome Reference 38' ?
8.4 years ago by Devon Ryan 105k
1
vote
0
replies
2.7k
views
Answer: A: RNA-seq from Co-culture, can I filter out the reads that map to one species and
8.4 years ago by Devon Ryan 105k
1
vote
1
reply
11k
views
Comment: C: Removing PCR duplicates - fastq or BAM?
8.4 years ago by Devon Ryan 105k
3
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2
replies
11k
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Comment: C: Removing PCR duplicates - fastq or BAM?
8.4 years ago by Devon Ryan 105k
0
votes
0
replies
2.5k
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Comment: C: deepTools draw coverage for specific region
8.4 years ago by Devon Ryan 105k
0
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1
reply
1.6k
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Comment: C: What does the X_OS_IND column of Phenotypes mean?
8.4 years ago by Devon Ryan 105k
0
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0
replies
5.6k
views
Answer: A: Duplicates in ATAC-seq data
8.4 years ago by Devon Ryan 105k
1
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2
replies
2.5k
views
Answer: A: deepTools draw coverage for specific region
8.4 years ago by Devon Ryan 105k
1
vote
0
replies
3.3k
views
Answer: A: Multiple group model matrix in rna-seq DE analysis
8.4 years ago by Devon Ryan 105k
0
votes
1
reply
12k
views
Comment: C: Stranger Things: unexpected limitations of popular tools
8.4 years ago by Devon Ryan 105k
0
votes
0
replies
3.8k
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Comment: C: Boxplot/bargraph for expression data using ggplot2
8.4 years ago by Devon Ryan 105k
0
votes
2
replies
3.8k
views
Comment: C: Boxplot/bargraph for expression data using ggplot2
8.4 years ago by Devon Ryan 105k
0
votes
0
replies
3.0k
views
Comment: C: RNA Seq Workflow
8.4 years ago by Devon Ryan 105k
1
vote
1
reply
12k
views
Comment: C: Stranger Things: unexpected limitations of popular tools
8.4 years ago by Devon Ryan 105k
2
votes
0
replies
12k
views
Comment: C: Stranger Things: unexpected limitations of popular tools
8.4 years ago by Devon Ryan 105k
2
votes
0
replies
12k
views
Comment: C: Stranger Things: unexpected limitations of popular tools
8.4 years ago by Devon Ryan 105k
1
vote
0
replies
1.3k
views
Answer: A: Can FPKM in different compartment be added directly?
8.4 years ago by Devon Ryan 105k
0
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0
replies
2.5k
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Comment: C: T Cell Repertoire Deep Sequencing
8.4 years ago by Devon Ryan 105k
3
votes
0
replies
3.0k
views
Answer: A: RNA Seq Workflow
8.4 years ago by Devon Ryan 105k
5
votes
0
replies
6.3k
views
Answer: A: Why not merging?
8.4 years ago by Devon Ryan 105k
0
votes
1
reply
14k
views
Comment: C: Extract further information from deepTools plotPCA
8.4 years ago by Devon Ryan 105k
0
votes
2
replies
3.0k
views
Answer: A: Why some entries from a same pair in the bam file have different TLEN?
8.4 years ago by Devon Ryan 105k
0
votes
0
replies
3.6k
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Comment: C: Illumina sequencing - paired end reads
8.4 years ago by Devon Ryan 105k
0
votes
0
replies
2.3k
views
Comment: C: Hypergeometric test ?
8.4 years ago by Devon Ryan 105k
2
votes
2
replies
5.2k
views
Answer: A: Converting beta value to M value (when beta=1)
8.4 years ago by Devon Ryan 105k
0
votes
1
reply
14k
views
Comment: C: Extract further information from deepTools plotPCA
8.4 years ago by Devon Ryan 105k
3
votes
1
reply
14k
views
Answer: A: Extract further information from deepTools plotPCA
8.4 years ago by Devon Ryan 105k
10,053 results • Page 53 of 202
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