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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
5 weeks ago by Ming Tommy Tang ★ 3.9k
2
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2
replies
782
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Answer: Answer: How to get enhancer regions
3 months ago by Ming Tommy Tang ★ 3.9k
3
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2
replies
869
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Answer: Answer: How to rename multiple fasq files
4 months ago by Ming Tommy Tang ★ 3.9k
2
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0
replies
524
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Answer: Answer: Ensembl transcript IDs
6 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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747
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by Ming Tommy Tang ★ 3.9k
2
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1
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467
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Answer: Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
6 months ago by Ming Tommy Tang ★ 3.9k
2
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1
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523
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Answer: Answer: Downstream analysis during sc-ATAC seq
6 months ago by Ming Tommy Tang ★ 3.9k
3
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0
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1.5k
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Answer: Answer: Picking optimal resolution for single cell in seurat pipeline
6 months ago by Ming Tommy Tang ★ 3.9k
3
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0
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667
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Answer: Answer: Bulk and Single cell TCRSeq analysis
8 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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645
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Answer: Answer: Blocky p300 ChIP-seq reads
8 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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676
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Answer: Answer: Phasing Classical HLA Alleles
9 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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853
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Answer: Answer: scRNA-seq subclustering
9 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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952
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Answer: Answer: clustering changes in complex heatmap everytime
10 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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454
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Answer: Answer: ANNOVAR Annotation of multiple VCF files error because of the absence of hg38_gn
10 months ago by Ming Tommy Tang ★ 3.9k
5
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1
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5.3k
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Answer: Answer: Convert Human to Mouse Symbols
10 months ago by Ming Tommy Tang ★ 3.9k
1
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1
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1.7k
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Answer: Answer: How to add VDJ clonotyping data to Seurat object of scRNA-seq
10 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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399
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Answer: Answer: How to remove batch effect from TCGA RNA-seq data?
10 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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967
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Answer: Answer: Annotation of spatial data
10 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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813
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Answer: Answer: How to interpret chipseq profile plot
10 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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1.5k
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Answer: Answer: Adding median value to VlnPlot in Seurat
13 months ago by Ming Tommy Tang ★ 3.9k
0
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0
replies
1.9k
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Answer: Answer: how to know what adapter sequences to trim for RNA-seq?
13 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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1.4k
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Answer: Answer: Variant Calling with Multiple Individuals in Freebayes
13 months ago by Ming Tommy Tang ★ 3.9k
0
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2
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1.7k
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Answer: Answer: Log2 FC Threshold
13 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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585
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Answer: Answer: Methylation data analysis
13 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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584
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Answer: Answer: Distinguishing specific reads from non-specific ones in KIR gene sequencing data
13 months ago by Ming Tommy Tang ★ 3.9k
3
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0
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2.2k
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Answer: Answer: How to perform synteny alignments and plots only with a gene?
13 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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1.5k
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Answer: Answer: Best tools for scTCR-seq (VDJ) analysis?
15 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
37k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
15 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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1.0k
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Answer: Answer: Counting and summation number of bases in a FASTQ.GZ file
15 months ago by Ming Tommy Tang ★ 3.9k
2
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0
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1.5k
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Answer: Answer: 10x scRNAseq from just R1 and R2
15 months ago by Ming Tommy Tang ★ 3.9k
1
vote
2
replies
797
views
Answer: Answer: Verify logistic regression assumptions
updated 15 months ago by 43k • written 16 months ago by ★ 3.9k
2
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1
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1.7k
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Answer: Answer: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
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998
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Answer: Answer: Mapping files to patients in TCGA (RNA-seq)
16 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
814
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Answer: Answer: How can I cluster the gene expression in the tissue between different species?
16 months ago by Ming Tommy Tang ★ 3.9k
1
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1
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2.4k
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Answer: Answer: nextflow script of RNA data analysis
16 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
1.4k
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Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
16 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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1.2k
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Answer: Answer: GSEA rnk-file.
16 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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5.2k
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Answer: Answer: How to avoid over-correction by using harmony or CCA to batch correction in scRN
2.6 years ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
2.7k
views
Answer: A: Chip-exo peak-pair distribution heatmap
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 3.9k
1
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0
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1.7k
views
Answer: A: chipseq over various genomic locations
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.9k
2
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0
replies
3.0k
views
Answer: A: binding close to gene
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.9k
2
votes
0
replies
2.6k
views
Answer: A: TSS plot with htseq 0.6.1 gives segmentation fault
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
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0
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9.5k
views
Answer: A: How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Inst
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
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0
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5.8k
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.9k
1
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1
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6.7k
views
Answer: A: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 3.9k
1
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1
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3.3k
views
Answer: A: Quality metrics of ChIP-seq BAM files
updated 4.5 years ago by 43k • written 8.7 years ago by ★ 3.9k
2
votes
0
replies
2.4k
views
Answer: A: heatmap.2 keeps default settings despite specified
updated 4.5 years ago by 43k • written 8.9 years ago by ★ 3.9k
0
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2
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5.5k
views
Answer: A: Reordering the bam file
updated 4.5 years ago by 43k • written 9.6 years ago by ★ 3.9k
0
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1
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3.1k
views
Answer: A: SAM File target extraction
updated 4.6 years ago by 43k • written 9.8 years ago by ★ 3.9k
0
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0
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5.3k
views
Answer: A: How to convert bam-readcount output to BED-VAF format
6.5 years ago by Ming Tommy Tang ★ 3.9k
147 results • Page 1 of 3
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