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198
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Comment: Comment: Understanding how to deal with Brain snRNA-seq data
1 day ago by Ming Tommy Tang ★ 4.5k
3
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104
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Tutorial: Step by step tutorial to replicate a genomics figure
R Unix ChIP-seq bioconductor
1 day ago by Ming Tommy Tang ★ 4.5k
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1
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310
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Answer: Answer: Integrating TCGA tumor RNAseq data with normal tissue samples from other sources
8 weeks ago by Ming Tommy Tang ★ 4.5k
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394
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Answer: Answer: Differential binding analysis between different TFs
11 weeks ago by Ming Tommy Tang ★ 4.5k
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1
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511
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Comment: Comment: Selecting DEGs for gene ontology using clusterprofiler and DESeq2
11 weeks ago by Ming Tommy Tang ★ 4.5k
1
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0
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214
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Tutorial: How CCA alignment and cell label transfer work in Seurat
biology computational seurat bioinformatics scRNAseq
11 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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1.3k
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Comment: Comment: How to determine whether it is 10x data
12 weeks ago by Ming Tommy Tang ★ 4.5k
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1
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636
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
12 weeks ago by Ming Tommy Tang ★ 4.5k
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1
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685
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Answer: Answer: GEOquery issue
12 weeks ago by Ming Tommy Tang ★ 4.5k
3
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0
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202
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Blog: How Seurat PCA projection, KNN and MNN for label transfer work
R RNA-seq scRNA-seq PCA
updated 12 weeks ago by 44k • written 12 weeks ago by ★ 4.5k
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1
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369
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Answer: Answer: How methylation is annotated, and what is the number behind the cg.... annotatio
3 months ago by Ming Tommy Tang ★ 4.5k
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351
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Comment: Comment: Multi OMICS analysis
3 months ago by Ming Tommy Tang ★ 4.5k
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0
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871
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Comment: Comment: Permutations FGSEA
3 months ago by Ming Tommy Tang ★ 4.5k
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463
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Comment: Comment: Cluster regions based on similar/dissimilar ChIP-seq signal profile across the w
3 months ago by Ming Tommy Tang ★ 4.5k
2
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1
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484
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Answer: Answer: What is wrong with my scripts?
3 months ago by Ming Tommy Tang ★ 4.5k
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1
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623
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Comment: Comment: Using DNA Methylation Data as Input for ChromHMM
3 months ago by Ming Tommy Tang ★ 4.5k
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0
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547
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Comment: Comment: NA Values Appearing After Log Transformation of array Data
4 months ago by Ming Tommy Tang ★ 4.5k
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0
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581
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Comment: Comment: GSEA single cell
4 months ago by Ming Tommy Tang ★ 4.5k
1
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1
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547
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Answer: Answer: NA Values Appearing After Log Transformation of array Data
4 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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415
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Comment: Comment: Extracting normalized counts from RDS (Seurat) file
4 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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381
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Answer: Answer: Pathway analysis for mouse gene sets
4 months ago by Ming Tommy Tang ★ 4.5k
2
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1
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419
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Answer: Answer: How can I get the list of all human ensembl transcript ids?
4 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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846
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 months ago by Ming Tommy Tang ★ 4.5k
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1
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517
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Tutorial: How to install R and Rstudio on macOS with M3 chip
rstats computational-biology
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
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0
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1.3k
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Comment: Comment: why R scripts are preferred to biopython for RNA-Seq analyses?
5 months ago by Ming Tommy Tang ★ 4.5k
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0
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1.9k
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Comment: Comment: Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and ant
5 months ago by Ming Tommy Tang ★ 4.5k
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0
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394
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Answer: Answer: Unable to Upload a .txt file into GSEA
5 months ago by Ming Tommy Tang ★ 4.5k
3
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0
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657
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Tutorial: 6 tips to stay up to date for bioinformatics
bioinformatics computational-biology
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
3
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0
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349
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Tutorial: Tutorial: How to configure terminal on macOS for bioinformatics
terminal macOS unix
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
5
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0
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664
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Tutorial: 10 books got me started on bioinformatics
bioinformatics computational-biology
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
1
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0
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540
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Comment: Comment: Tools for estimating telomere length
5 months ago by Ming Tommy Tang ★ 4.5k
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0
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674
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Comment: Comment: Pseudobulk for scRNA-seq: sum or mean?
5 months ago by Ming Tommy Tang ★ 4.5k
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0
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650
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Answer: Answer: How can we identify if there are neighboring genes or overlapping promoter regio
5 months ago by Ming Tommy Tang ★ 4.5k
2
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0
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516
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Answer: Answer: temp directory as output in snakemake
5 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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594
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Comment: Comment: Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to T
7 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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1.0k
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Comment: Comment: Creating GCT files
7 months ago by Ming Tommy Tang ★ 4.5k
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0
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350
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Comment: Comment: ChIP-seq SICER
7 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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6.0k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 7 months ago by 44k • written 7 months ago by ★ 4.5k
0
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0
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991
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Comment: Comment: Slot to pull data from for DoHeatmap
7 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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622
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Answer: Answer: Example human WGS fastq data
7 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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989
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Answer: Answer: Download SRR by parallele and fastq dump with a wired problem
7 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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1.2k
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Comment: Comment: Alignment tool for very short reads (25bp)
7 months ago by Ming Tommy Tang ★ 4.5k
2
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0
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413
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Tutorial: Seurat Object Explained: Beginner's Guide and Demo
scRNA-seq Seurat single-cell
updated 7 months ago by 44k • written 7 months ago by ★ 4.5k
2
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0
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914
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Answer: Answer: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
7 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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435
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Comment: Comment: How to find column names for ENCODE ATAC-seq data?
7 months ago by Ming Tommy Tang ★ 4.5k
6
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1
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663
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Tutorial: How to organize a computational biology project
file-organization
updated 7 months ago by ★ 28k • written 7 months ago by ★ 4.5k
2
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1
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697
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Comment: Comment: chIP-seq vs ATACseq analysis
7 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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725
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Comment: Comment: Making heatmaps of ATACseq annotation data in R?
7 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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673
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Comment: Comment: Clusters in Differential Gene Expression Data
7 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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340
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Tutorial: SingleCellExperiment object explained with a real-world example
bioconductor scRNA-seq single-cell
updated 7 months ago by 44k • written 7 months ago by ★ 4.5k
474 results • Page 1 of 10
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