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217
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Answer: Answer: Methylation data analysis
1 day ago by Ming Tommy Tang ★ 2.9k
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360
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Comment: Comment: SRA Data Download
1 day ago by Ming Tommy Tang ★ 2.9k
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426
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Comment: Comment: Benjamini–Hochberg correction, FDR in genes' expressions
2 days ago by Ming Tommy Tang ★ 2.9k
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253
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Answer: Answer: Distinguishing specific reads from non-specific ones in KIR gene sequencing data
2 days ago by Ming Tommy Tang ★ 2.9k
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385
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Answer: Answer: How to perform synteny alignments and plots only with a gene?
2 days ago by Ming Tommy Tang ★ 2.9k
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293
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Comment: Comment: deconvolution of spatial transcriptome
7 weeks ago by Ming Tommy Tang ★ 2.9k
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756
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Answer: Answer: Best tools for scTCR-seq (VDJ) analysis?
7 weeks ago by Ming Tommy Tang ★ 2.9k
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1.4k
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Comment: Comment: Normalizing TCR data
7 weeks ago by Ming Tommy Tang ★ 2.9k
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274
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Comment: Comment: Do I need to correct for sequencing depth in bulk RNA seq?
7 weeks ago by Ming Tommy Tang ★ 2.9k
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31k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
8 weeks ago by Ming Tommy Tang ★ 2.9k
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1
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674
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
10 weeks ago by Ming Tommy Tang ★ 2.9k
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1
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540
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Answer: Answer: Counting and summation number of bases in a FASTQ.GZ file
10 weeks ago by Ming Tommy Tang ★ 2.9k
2
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548
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Answer: Answer: 10x scRNAseq from just R1 and R2
10 weeks ago by Ming Tommy Tang ★ 2.9k
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1
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674
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
10 weeks ago by Ming Tommy Tang ★ 2.9k
1
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2
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513
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Answer: Answer: Verify logistic regression assumptions
updated 6 weeks ago by 38k • written 10 weeks ago by ★ 2.9k
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885
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Comment: Comment: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
10 weeks ago by Ming Tommy Tang ★ 2.9k
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0
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718
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Comment: Comment: batch sequence retrieval using exon coordinates
10 weeks ago by Ming Tommy Tang ★ 2.9k
2
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1
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885
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Answer: Answer: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
11 weeks ago by Ming Tommy Tang ★ 2.9k
0
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1
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620
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Answer: Answer: Mapping files to patients in TCGA (RNA-seq)
11 weeks ago by Ming Tommy Tang ★ 2.9k
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0
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622
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Comment: Comment: UMAP labeling manipulation
11 weeks ago by Ming Tommy Tang ★ 2.9k
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1
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1.0k
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Comment: Comment: analyzing a read mapped file with python
11 weeks ago by Ming Tommy Tang ★ 2.9k
1
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1.3k
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Comment: Comment: nextflow script of RNA data analysis
11 weeks ago by Ming Tommy Tang ★ 2.9k
2
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0
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487
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Answer: Answer: How can I cluster the gene expression in the tissue between different species?
11 weeks ago by Ming Tommy Tang ★ 2.9k
1
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1
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1.3k
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Answer: Answer: nextflow script of RNA data analysis
11 weeks ago by Ming Tommy Tang ★ 2.9k
1
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0
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717
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Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
11 weeks ago by Ming Tommy Tang ★ 2.9k
1
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0
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550
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Answer: Answer: GSEA rnk-file.
11 weeks ago by Ming Tommy Tang ★ 2.9k
1
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0
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729
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News: New ebook: From cell line to Command line to learn computational biology
snakemake biology unix RNAseq computational
11 weeks ago by Ming Tommy Tang ★ 2.9k
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0
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3.6k
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Answer: Answer: How to avoid over-correction by using harmony or CCA to batch correction in scRN
18 months ago by Ming Tommy Tang ★ 2.9k
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0
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3.3k
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Comment: C: Obtain ChIPseq peaks from a bedgraph file with continuous regions
2.3 years ago by Ming Tommy Tang ★ 2.9k
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0
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1.9k
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Comment: C: No rule keywords allowed after run in snakefile
2.9 years ago by Ming Tommy Tang ★ 2.9k
0
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0
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2.5k
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Answer: A: Chip-exo peak-pair distribution heatmap
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 2.9k
1
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0
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1.4k
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Answer: A: chipseq over various genomic locations
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 2.9k
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0
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12k
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Comment: C: htseq-count for pair-end RNA-seq
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
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0
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3.0k
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Comment: C: Methods for differential allele-specific expression?
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
2
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0
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2.5k
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Answer: A: binding close to gene
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
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0
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4.5k
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Comment: Comment: HiSeq2000 RNA-seq QC
updated 14 months ago by 38k • written 8.9 years ago by ★ 2.9k
2
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0
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2.3k
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Answer: A: TSS plot with htseq 0.6.1 gives segmentation fault
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
0
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1
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4.5k
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Comment: C: HiSeq2000 RNA-seq QC
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
0
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2
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4.5k
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Comment: C: HiSeq2000 RNA-seq QC
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
0
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0
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8.9k
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Answer: A: How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Inst
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
0
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0
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5.4k
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.9k
0
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0
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6.6k
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Comment: C: How to deal with the CNV file and NOCNV file measured by Affy SNP6.0 of level 3
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.9k
1
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1
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6.1k
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Answer: A: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
updated 3.3 years ago by 38k • written 7.3 years ago by ★ 2.9k
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0
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3.8k
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Comment: C: count the number of transcription factor binding sites
updated 3.3 years ago by 38k • written 7.7 years ago by ★ 2.9k
1
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1
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2.9k
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Answer: A: Quality metrics of ChIP-seq BAM files
updated 3.3 years ago by 38k • written 7.5 years ago by ★ 2.9k
2
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0
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2.3k
views
Answer: A: heatmap.2 keeps default settings despite specified
updated 3.4 years ago by 38k • written 7.8 years ago by ★ 2.9k
0
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2
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4.7k
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Answer: A: Reordering the bam file
updated 3.4 years ago by 38k • written 8.5 years ago by ★ 2.9k
0
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1
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2.7k
views
Comment: C: SAM File target extraction
updated 3.4 years ago by 38k • written 8.6 years ago by ★ 2.9k
0
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1
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2.7k
views
Answer: A: SAM File target extraction
updated 3.4 years ago by 38k • written 8.6 years ago by ★ 2.9k
0
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1
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10k
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Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
updated 3.4 years ago by 38k • written 8.9 years ago by ★ 2.9k
325 results • Page 1 of 7
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