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Comment: Comment: New ebook: From cell line to Command line to learn computational biology
14 days ago by Ming Tommy Tang ★ 3.6k
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128
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Blog: How to use random forest for clustering
computational-biology random-forest
updated 19 days ago by 41k • written 20 days ago by ★ 3.6k
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2
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2.2k
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News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
14 days ago by Ming Tommy Tang ★ 3.6k
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372
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Comment: Comment: FPKM values for DE analysis - Why?
5 weeks ago by Ming Tommy Tang ★ 3.6k
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350
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Answer: Answer: Ensembl transcript IDs
5 weeks ago by Ming Tommy Tang ★ 3.6k
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1
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486
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
5 weeks ago by Ming Tommy Tang ★ 3.6k
2
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1
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322
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Answer: Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
5 weeks ago by Ming Tommy Tang ★ 3.6k
2
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1
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321
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Answer: Answer: Downstream analysis during sc-ATAC seq
5 weeks ago by Ming Tommy Tang ★ 3.6k
1
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0
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285
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Tutorial: How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq heatmap rstats TCGA
5 weeks ago by Ming Tommy Tang ★ 3.6k
3
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0
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481
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Answer: Answer: Picking optimal resolution for single cell in seurat pipeline
8 weeks ago by Ming Tommy Tang ★ 3.6k
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0
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368
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Comment: Comment: 10X scRNA-seq v2 odd fastq format
11 weeks ago by Ming Tommy Tang ★ 3.6k
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1
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394
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Comment: Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
11 weeks ago by Ming Tommy Tang ★ 3.6k
3
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0
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511
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Comment: Comment: Seeking a real project
11 weeks ago by Ming Tommy Tang ★ 3.6k
3
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0
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430
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Answer: Answer: Bulk and Single cell TCRSeq analysis
3 months ago by Ming Tommy Tang ★ 3.6k
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1
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472
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Answer: Answer: Blocky p300 ChIP-seq reads
3 months ago by Ming Tommy Tang ★ 3.6k
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0
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383
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Comment: Comment: How to choose the number of cluster in single cell multiome (RNA & ATAC)
3 months ago by Ming Tommy Tang ★ 3.6k
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0
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432
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Tutorial: multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation RNAseq multiomics
3 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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374
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Tutorial: T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq TCR single-cell computational biology
3 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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327
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Tutorial: cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
transcriptome rstats spatial single-cell
3 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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491
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Comment: Comment: DMR Analysis for RRBS: what annotation file to I use?
4 months ago by Ming Tommy Tang ★ 3.6k
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1
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372
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Comment: Comment: How to resample contacts data to lower bins
4 months ago by Ming Tommy Tang ★ 3.6k
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0
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508
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Answer: Answer: Phasing Classical HLA Alleles
4 months ago by Ming Tommy Tang ★ 3.6k
1
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0
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429
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Tutorial: common mistakes in using spreadsheets
excel spreadsheet structured-data
updated 4 months ago by 41k • written 4 months ago by ★ 3.6k
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0
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761
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Comment: Comment: Convert files made for b37 into hg19 human reference?
4 months ago by Ming Tommy Tang ★ 3.6k
1
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0
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475
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Tutorial: How to convert gene ids in R
computational-biology gene-id rstats
updated 4 months ago by 41k • written 4 months ago by ★ 3.6k
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0
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670
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Comment: Comment: How to use UCSC genome browser to check the transcription factor binding at your
4 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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493
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Comment: Comment: Is there a way to prove that two VCFs came from the same person?
4 months ago by Ming Tommy Tang ★ 3.6k
2
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0
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2.9k
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Tutorial: How to read multiple matrices from GEO into R and make multiple Seurat objects and merge them into a single object.
unix Seurat single-cell rstats
updated 4 months ago by 41k • written 4 months ago by ★ 3.6k
3
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2
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670
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Tutorial: How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC transcription factor ChIP-seq
4 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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375
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Comment: Comment: How to plot VDJ clonotyping data in UMAP of Seurat object using Immunarch
4 months ago by Ming Tommy Tang ★ 3.6k
3
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0
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678
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Comment: Comment: interpreting results from pathway analysis
4 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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792
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
4 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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388
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Comment: Comment: Make rownames more legible in R Heatmap
5 months ago by Ming Tommy Tang ★ 3.6k
2
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0
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339
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Tutorial: Understanding Hierarchical Clustering in R, Distance Measures, and Linkage Methods
clustering gene-expression rstats
updated 5 months ago by 41k • written 5 months ago by ★ 3.6k
0
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1
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555
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Answer: Answer: scRNA-seq subclustering
5 months ago by Ming Tommy Tang ★ 3.6k
1
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0
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573
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Comment: Comment: How to interpret RNAseq output?
5 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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328
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Comment: Comment: change gene id to gene name
5 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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736
views
Comment: Comment: After R studio update, restrict view of columns in dataframe.
5 months ago by Ming Tommy Tang ★ 3.6k
0
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1
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653
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Answer: Answer: clustering changes in complex heatmap everytime
5 months ago by Ming Tommy Tang ★ 3.6k
1
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0
replies
1.0k
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Comment: Comment: SRA-toolkit installation: "fastq-dump not found"
5 months ago by Ming Tommy Tang ★ 3.6k
1
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1
reply
513
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Comment: Comment: how to tell if the JackStrawPlot is good
5 months ago by Ming Tommy Tang ★ 3.6k
1
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1
reply
736
views
Comment: Comment: After R studio update, restrict view of columns in dataframe.
5 months ago by Ming Tommy Tang ★ 3.6k
1
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0
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1.7k
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Comment: Comment: SEACR and MACS2
5 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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685
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Comment: Comment: Is there any way to access gnomAD data from R?
5 months ago by Ming Tommy Tang ★ 3.6k
1
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1
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513
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Comment: Comment: how to tell if the JackStrawPlot is good
5 months ago by Ming Tommy Tang ★ 3.6k
0
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0
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295
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Answer: Answer: ANNOVAR Annotation of multiple VCF files error because of the absence of hg38_gn
5 months ago by Ming Tommy Tang ★ 3.6k
1
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0
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737
views
Comment: Comment: GSEA documentation
5 months ago by Ming Tommy Tang ★ 3.6k
4
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0
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537
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Tutorial: How to do GSEA in R for RNAseq data
gsea RNAseq rstats
5 months ago by Ming Tommy Tang ★ 3.6k
2
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1
reply
2.3k
views
Answer: Answer: Convert Human to Mouse Symbols
5 months ago by Ming Tommy Tang ★ 3.6k
0
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0
replies
607
views
Comment: Comment: complex heatmap
5 months ago by Ming Tommy Tang ★ 3.6k
403 results • Page 1 of 9
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