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1
vote
0
replies
217
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Answer:
Answer: Methylation data analysis
1 day ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
360
views
Comment:
Comment: SRA Data Download
1 day ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
426
views
Comment:
Comment: Benjamini–Hochberg correction, FDR in genes' expressions
2 days ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
253
views
Answer:
Answer: Distinguishing specific reads from non-specific ones in KIR gene sequencing data
2 days ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
385
views
Answer:
Answer: How to perform synteny alignments and plots only with a gene?
2 days ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
293
views
Comment:
Comment: deconvolution of spatial transcriptome
7 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
756
views
Answer:
Answer: Best tools for scTCR-seq (VDJ) analysis?
7 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: Normalizing TCR data
7 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
274
views
Comment:
Comment: Do I need to correct for sequencing depth in bulk RNA seq?
7 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
31k
views
Answer:
Answer: How to know that your RNA-seq is stranded or not?
8 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
674
views
Comment:
Comment: Any command line tools that can design primers from a multiple sequence alignmen
10 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
540
views
Answer:
Answer: Counting and summation number of bases in a FASTQ.GZ file
10 weeks ago by
Ming Tommy Tang
★ 2.9k
2
votes
0
replies
548
views
Answer:
Answer: 10x scRNAseq from just R1 and R2
10 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
674
views
Comment:
Comment: Any command line tools that can design primers from a multiple sequence alignmen
10 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
2
replies
513
views
Answer:
Answer: Verify logistic regression assumptions
updated 6 weeks ago by
Ram
38k • written 10 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
885
views
Comment:
Comment: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
10 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
718
views
Comment:
Comment: batch sequence retrieval using exon coordinates
10 weeks ago by
Ming Tommy Tang
★ 2.9k
2
votes
1
reply
885
views
Answer:
Answer: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
11 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
620
views
Answer:
Answer: Mapping files to patients in TCGA (RNA-seq)
11 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
622
views
Comment:
Comment: UMAP labeling manipulation
11 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
1.0k
views
Comment:
Comment: analyzing a read mapped file with python
11 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
1.3k
views
Comment:
Comment: nextflow script of RNA data analysis
11 weeks ago by
Ming Tommy Tang
★ 2.9k
2
votes
0
replies
487
views
Answer:
Answer: How can I cluster the gene expression in the tissue between different species?
11 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
1
reply
1.3k
views
Answer:
Answer: nextflow script of RNA data analysis
11 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
717
views
Answer:
Answer: make volcano plot from multiple dataframes with same genes and different foldcha
11 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
550
views
Answer:
Answer: GSEA rnk-file.
11 weeks ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
729
views
News:
New ebook: From cell line to Command line to learn computational biology
snakemake
biology
unix
RNAseq
computational
11 weeks ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
3.6k
views
Answer:
Answer: How to avoid over-correction by using harmony or CCA to batch correction in scRN
18 months ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
3.3k
views
Comment:
C: Obtain ChIPseq peaks from a bedgraph file with continuous regions
2.3 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
1.9k
views
Comment:
C: No rule keywords allowed after run in snakefile
2.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
2.5k
views
Answer:
A: Chip-exo peak-pair distribution heatmap
updated 3.2 years ago by
Ram
38k • written 8.8 years ago by
Ming Tommy Tang
★ 2.9k
1
vote
0
replies
1.4k
views
Answer:
A: chipseq over various genomic locations
updated 3.2 years ago by
Ram
38k • written 8.8 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
12k
views
Comment:
C: htseq-count for pair-end RNA-seq
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
3.0k
views
Comment:
C: Methods for differential allele-specific expression?
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
2
votes
0
replies
2.5k
views
Answer:
A: binding close to gene
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
4.5k
views
Comment:
Comment: HiSeq2000 RNA-seq QC
updated 14 months ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
2
votes
0
replies
2.3k
views
Answer:
A: TSS plot with htseq 0.6.1 gives segmentation fault
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
4.5k
views
Comment:
C: HiSeq2000 RNA-seq QC
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
2
replies
4.5k
views
Comment:
C: HiSeq2000 RNA-seq QC
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
8.9k
views
Answer:
A: How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Inst
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
5.4k
views
Answer:
A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 3.2 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
6.6k
views
Comment:
C: How to deal with the CNV file and NOCNV file measured by Affy SNP6.0 of level 3
updated 3.2 years ago by
Ram
38k • written 7.2 years ago by
Ming Tommy Tang
★ 2.9k
1
vote
1
reply
6.1k
views
Answer:
A: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
updated 3.3 years ago by
Ram
38k • written 7.3 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
0
replies
3.8k
views
Comment:
C: count the number of transcription factor binding sites
updated 3.3 years ago by
Ram
38k • written 7.7 years ago by
Ming Tommy Tang
★ 2.9k
1
vote
1
reply
2.9k
views
Answer:
A: Quality metrics of ChIP-seq BAM files
updated 3.3 years ago by
Ram
38k • written 7.5 years ago by
Ming Tommy Tang
★ 2.9k
2
votes
0
replies
2.3k
views
Answer:
A: heatmap.2 keeps default settings despite specified
updated 3.4 years ago by
Ram
38k • written 7.8 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
2
replies
4.7k
views
Answer:
A: Reordering the bam file
updated 3.4 years ago by
Ram
38k • written 8.5 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
2.7k
views
Comment:
C: SAM File target extraction
updated 3.4 years ago by
Ram
38k • written 8.6 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
2.7k
views
Answer:
A: SAM File target extraction
updated 3.4 years ago by
Ram
38k • written 8.6 years ago by
Ming Tommy Tang
★ 2.9k
0
votes
1
reply
10k
views
Comment:
C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
updated 3.4 years ago by
Ram
38k • written 8.9 years ago by
Ming Tommy Tang
★ 2.9k
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