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2.2k
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Comment:
Comment: New ebook: From cell line to Command line to learn computational biology
14 days ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
128
views
Blog:
How to use random forest for clustering
computational-biology
random-forest
updated 19 days ago by
Ram
41k • written 20 days ago by
Ming Tommy Tang
★ 3.6k
3
votes
2
replies
2.2k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
14 days ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
372
views
Comment:
Comment: FPKM values for DE analysis - Why?
5 weeks ago by
Ming Tommy Tang
★ 3.6k
2
votes
0
replies
350
views
Answer:
Answer: Ensembl transcript IDs
5 weeks ago by
Ming Tommy Tang
★ 3.6k
0
votes
1
reply
486
views
Answer:
Answer: Integration Seurat different healthy samples (fresh vs frozen)
5 weeks ago by
Ming Tommy Tang
★ 3.6k
2
votes
1
reply
322
views
Answer:
Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
5 weeks ago by
Ming Tommy Tang
★ 3.6k
2
votes
1
reply
321
views
Answer:
Answer: Downstream analysis during sc-ATAC seq
5 weeks ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
285
views
Tutorial:
How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq
heatmap
rstats
TCGA
5 weeks ago by
Ming Tommy Tang
★ 3.6k
3
votes
0
replies
481
views
Answer:
Answer: Picking optimal resolution for single cell in seurat pipeline
8 weeks ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
368
views
Comment:
Comment: 10X scRNA-seq v2 odd fastq format
11 weeks ago by
Ming Tommy Tang
★ 3.6k
0
votes
1
reply
394
views
Comment:
Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
11 weeks ago by
Ming Tommy Tang
★ 3.6k
3
votes
0
replies
511
views
Comment:
Comment: Seeking a real project
11 weeks ago by
Ming Tommy Tang
★ 3.6k
3
votes
0
replies
430
views
Answer:
Answer: Bulk and Single cell TCRSeq analysis
3 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
1
reply
472
views
Answer:
Answer: Blocky p300 ChIP-seq reads
3 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
383
views
Comment:
Comment: How to choose the number of cluster in single cell multiome (RNA & ATAC)
3 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
432
views
Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation
RNAseq
multiomics
3 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
374
views
Tutorial:
T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq
TCR
single-cell
computational
biology
3 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
327
views
Tutorial:
cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
transcriptome
rstats
spatial
single-cell
3 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
491
views
Comment:
Comment: DMR Analysis for RRBS: what annotation file to I use?
4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
1
reply
372
views
Comment:
Comment: How to resample contacts data to lower bins
4 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
508
views
Answer:
Answer: Phasing Classical HLA Alleles
4 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
429
views
Tutorial:
common mistakes in using spreadsheets
excel
spreadsheet
structured-data
updated 4 months ago by
Ram
41k • written 4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
761
views
Comment:
Comment: Convert files made for b37 into hg19 human reference?
4 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
475
views
Tutorial:
How to convert gene ids in R
computational-biology
gene-id
rstats
updated 4 months ago by
Ram
41k • written 4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
670
views
Comment:
Comment: How to use UCSC genome browser to check the transcription factor binding at your
4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
493
views
Comment:
Comment: Is there a way to prove that two VCFs came from the same person?
4 months ago by
Ming Tommy Tang
★ 3.6k
2
votes
0
replies
2.9k
views
Tutorial:
How to read multiple matrices from GEO into R and make multiple Seurat objects and merge them into a single object.
unix
Seurat
single-cell
rstats
updated 4 months ago by
Ram
41k • written 4 months ago by
Ming Tommy Tang
★ 3.6k
3
votes
2
replies
670
views
Tutorial:
How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC
transcription
factor
ChIP-seq
4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
375
views
Comment:
Comment: How to plot VDJ clonotyping data in UMAP of Seurat object using Immunarch
4 months ago by
Ming Tommy Tang
★ 3.6k
3
votes
0
replies
678
views
Comment:
Comment: interpreting results from pathway analysis
4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
792
views
Comment:
Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
4 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
388
views
Comment:
Comment: Make rownames more legible in R Heatmap
5 months ago by
Ming Tommy Tang
★ 3.6k
2
votes
0
replies
339
views
Tutorial:
Understanding Hierarchical Clustering in R, Distance Measures, and Linkage Methods
clustering
gene-expression
rstats
updated 5 months ago by
Ram
41k • written 5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
1
reply
555
views
Answer:
Answer: scRNA-seq subclustering
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
573
views
Comment:
Comment: How to interpret RNAseq output?
5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
328
views
Comment:
Comment: change gene id to gene name
5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
736
views
Comment:
Comment: After R studio update, restrict view of columns in dataframe.
5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
1
reply
653
views
Answer:
Answer: clustering changes in complex heatmap everytime
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
1.0k
views
Comment:
Comment: SRA-toolkit installation: "fastq-dump not found"
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
1
reply
513
views
Comment:
Comment: how to tell if the JackStrawPlot is good
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
1
reply
736
views
Comment:
Comment: After R studio update, restrict view of columns in dataframe.
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
1.7k
views
Comment:
Comment: SEACR and MACS2
5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
685
views
Comment:
Comment: Is there any way to access gnomAD data from R?
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
1
reply
513
views
Comment:
Comment: how to tell if the JackStrawPlot is good
5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
295
views
Answer:
Answer: ANNOVAR Annotation of multiple VCF files error because of the absence of hg38_gn
5 months ago by
Ming Tommy Tang
★ 3.6k
1
vote
0
replies
737
views
Comment:
Comment: GSEA documentation
5 months ago by
Ming Tommy Tang
★ 3.6k
4
votes
0
replies
537
views
Tutorial:
How to do GSEA in R for RNAseq data
gsea
RNAseq
rstats
5 months ago by
Ming Tommy Tang
★ 3.6k
2
votes
1
reply
2.3k
views
Answer:
Answer: Convert Human to Mouse Symbols
5 months ago by
Ming Tommy Tang
★ 3.6k
0
votes
0
replies
607
views
Comment:
Comment: complex heatmap
5 months ago by
Ming Tommy Tang
★ 3.6k
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