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Showing :
answers
1
vote
0
replies
4.1k
views
Answer:
A: Downloading genomic interval for hg38
6.8 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.8k
views
Answer:
A: bulk download in ENCODE
6.8 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
1.8k
views
Answer:
A: How to use the qvalue function for multiple testing?
6.9 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.2k
views
Answer:
A: Good Pipeline for ChIPexo
6.9 years ago by
Ming Tommy Tang
★ 3.9k
7
votes
3
replies
3.4k
views
Answer:
A: Seeking private tutor to learn RNA/ChIP-Seq data analysis
7.0 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
3.7k
views
Answer:
A: Depth of coverage in Bam file does not match depth in VCF file
7.0 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
2.0k
views
Answer:
A: regulation of gene expression of a set of genes
7.5 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
4.7k
views
Answer:
A: TPM and RPKM normalization from counts dataframe
7.5 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
2.0k
views
Answer:
A: For RNA seq data analysis
7.5 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
7.6k
views
Answer:
A: GSEA preranked list, values with same rank?
7.5 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
3.2k
views
Answer:
A: R package for clonal expansion
7.5 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
6.2k
views
Answer:
A: Precomputed TCGA tumor purity data
7.6 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
4.8k
views
Answer:
A: (Modern, mid-2016) RNA-seq software pipeline
7.7 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
4.0k
views
Answer:
A: Visualization of ChIP-seq data (mapped reads)
7.9 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
1
reply
4.9k
views
Answer:
A: criteria for choosing proper parameters for MASC2 -- chip-seq ?
7.9 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
6.3k
views
Answer:
A: Combining RNA seq and H3K27ac ChIP seq data
7.9 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
2.0k
views
Answer:
A: Correlate binding sites of two transcription factor from chip-seq data
7.9 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
2.2k
views
Answer:
A: Retrieve gene names from gene symbols using Entrez?
7.9 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
4.3k
views
Answer:
A: How to get nucleotide sequences for a given list of genomic positions.
7.9 years ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
5.1k
views
Answer:
A: [UPDATE] Thrown into a Bioinformatics Position
7.9 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
6.3k
views
Answer:
A: Multisample vcf to table
7.9 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
16k
views
Answer:
A: Which Chip Seq Peak Callers Do You Use?
7.9 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
2.0k
views
Answer:
A: Do I need to remove unmapped reads before running MACS2?
7.9 years ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
9.4k
views
Answer:
A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
7.9 years ago by
Ming Tommy Tang
★ 3.9k
8
votes
1
reply
6.5k
views
Answer:
A: Peak callers for ChIP seq comparison
8.0 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
44k
views
Answer:
A: FPKM vs raw counts vs RPKM
8.0 years ago by
Ming Tommy Tang
★ 3.9k
4
votes
1
reply
2.1k
views
Answer:
A: new line to tab in every second column
8.0 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
2.1k
views
Answer:
A: new line to tab in every second column
8.0 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
4.4k
views
Answer:
A: quantify signal in a chromosomal interval in different .bw files
8.0 years ago by
Ming Tommy Tang
★ 3.9k
8
votes
1
reply
32k
views
Answer:
A: How to create a mutation landscape (waterfall) plot with GenVisR
8.2 years ago by
Ming Tommy Tang
★ 3.9k
3
votes
4
replies
50k
views
Answer:
A: Visualization of ChIP-seq data using Heatmaps
8.2 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
2
replies
3.0k
views
Answer:
A: Chip Seq Peaks/ Enrichment Profilig?
8.6 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
4.5k
views
Answer:
A: Merging And De-Duplicating Structural Variant Calls (Bedpe)
8.6 years ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
6.9k
views
Answer:
Answer: convert SNP calls to amino acid change
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
6.2k
views
Answer:
Answer: Making TSS plots for some genes for a particular histone mark
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
1
reply
3.9k
views
Answer:
A: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
8.7 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
1.4k
views
Answer:
Answer: What does it mean a H4K20me1 has a diffuse profile?
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
3.1k
views
Answer:
Answer: Programs That Report Structural Variations For Tumor/Normal In Vcf Format
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
47k
views
Answer:
Answer: Convert Refseq Id To Gene Name
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Ming Tommy Tang
★ 3.9k
7
votes
3
replies
30k
views
Answer:
Answer: How to generate a fasta file from a python dictionary or lists?
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
1.8k
views
Answer:
Answer: MACS: overalll expected FDR?
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
2.6k
views
Answer:
A: Search for a "standard" PWM for Kozak Sequence
9.0 years ago by
Ming Tommy Tang
★ 3.9k
2
votes
1
reply
7.4k
views
Answer:
Answer: Top MACS peaks from ChIP-seq look identical to input
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
3.2k
views
Answer:
Answer: Metaseq: Average ChIP-seq signal over promoters error
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
2.4k
views
Answer:
Answer: what's the publicly available TF binding ChIP-seq dataset with the highest cover
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Ming Tommy Tang
★ 3.9k
4
votes
1
reply
6.4k
views
Answer:
Answer: histone mark associated with enhancers
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Ming Tommy Tang
★ 3.9k
6
votes
1
reply
17k
views
Answer:
Answer: What is the best way to match gene id with gene name.
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Ming Tommy Tang
★ 3.9k
1
vote
1
reply
2.1k
views
Answer:
Answer: Tools to Choose For RNA-Seq Normalization?
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
5.7k
views
Answer:
Answer: normalize on chip-seq data
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
15k
views
Answer:
Answer: Identify gene symbols given a list of chromosome positions
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Ming Tommy Tang
★ 3.9k
147 results • Page
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