Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
596
views
Answer: Answer: Methylation data analysis
14 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
892
views
Comment: Comment: SRA Data Download
14 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
997
views
Comment: Comment: Benjamini–Hochberg correction, FDR in genes' expressions
14 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
595
views
Answer: Answer: Distinguishing specific reads from non-specific ones in KIR gene sequencing data
14 months ago by Ming Tommy Tang ★ 3.9k
3
votes
0
replies
2.2k
views
Answer: Answer: How to perform synteny alignments and plots only with a gene?
14 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
643
views
Comment: Comment: deconvolution of spatial transcriptome
15 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
1.5k
views
Answer: Answer: Best tools for scTCR-seq (VDJ) analysis?
15 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
2.0k
views
Comment: Comment: Normalizing TCR data
15 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
570
views
Comment: Comment: Do I need to correct for sequencing depth in bulk RNA seq?
15 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
37k
views
Answer: Answer: How to know that your RNA-seq is stranded or not?
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
1.4k
views
Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
1.0k
views
Answer: Answer: Counting and summation number of bases in a FASTQ.GZ file
16 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
1.6k
views
Answer: Answer: 10x scRNAseq from just R1 and R2
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
1.4k
views
Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
16 months ago by Ming Tommy Tang ★ 3.9k
1
vote
2
replies
805
views
Answer: Answer: Verify logistic regression assumptions
updated 15 months ago by 43k • written 16 months ago by ★ 3.9k
0
votes
0
replies
1.7k
views
Comment: Comment: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
1.2k
views
Comment: Comment: batch sequence retrieval using exon coordinates
16 months ago by Ming Tommy Tang ★ 3.9k
2
votes
1
reply
1.7k
views
Answer: Answer: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
1.0k
views
Answer: Answer: Mapping files to patients in TCGA (RNA-seq)
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
2.1k
views
Comment: Comment: UMAP labeling manipulation
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
2.1k
views
Comment: Comment: analyzing a read mapped file with python
16 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
2.5k
views
Comment: Comment: nextflow script of RNA data analysis
16 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
827
views
Answer: Answer: How can I cluster the gene expression in the tissue between different species?
16 months ago by Ming Tommy Tang ★ 3.9k
1
vote
1
reply
2.5k
views
Answer: Answer: nextflow script of RNA data analysis
16 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
1.5k
views
Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
16 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
1.2k
views
Answer: Answer: GSEA rnk-file.
16 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
5.2k
views
Answer: Answer: How to avoid over-correction by using harmony or CCA to batch correction in scRN
2.6 years ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
4.8k
views
Comment: C: Obtain ChIPseq peaks from a bedgraph file with continuous regions
3.5 years ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
2.6k
views
Comment: C: No rule keywords allowed after run in snakefile
4.0 years ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
2.7k
views
Answer: A: Chip-exo peak-pair distribution heatmap
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 3.9k
1
vote
0
replies
1.7k
views
Answer: A: chipseq over various genomic locations
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
0
replies
13k
views
Comment: C: htseq-count for pair-end RNA-seq
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
0
replies
3.3k
views
Comment: C: Methods for differential allele-specific expression?
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
2
votes
0
replies
3.0k
views
Answer: A: binding close to gene
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
0
replies
5.1k
views
Comment: Comment: HiSeq2000 RNA-seq QC
updated 2.3 years ago by 43k • written 10.0 years ago by ★ 3.9k
2
votes
0
replies
2.6k
views
Answer: A: TSS plot with htseq 0.6.1 gives segmentation fault
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
1
reply
5.1k
views
Comment: C: HiSeq2000 RNA-seq QC
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
2
replies
5.1k
views
Comment: C: HiSeq2000 RNA-seq QC
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
0
replies
9.5k
views
Answer: A: How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Inst
updated 4.4 years ago by 43k • written 10.1 years ago by ★ 3.9k
0
votes
0
replies
5.8k
views
Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 4.4 years ago by 43k • written 10.1 years ago by ★ 3.9k
0
votes
0
replies
7.1k
views
Comment: C: How to deal with the CNV file and NOCNV file measured by Affy SNP6.0 of level 3
updated 4.4 years ago by 43k • written 8.3 years ago by ★ 3.9k
1
vote
1
reply
6.7k
views
Answer: A: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 3.9k
0
votes
0
replies
4.3k
views
Comment: C: count the number of transcription factor binding sites
updated 4.5 years ago by 43k • written 8.9 years ago by ★ 3.9k
1
vote
1
reply
3.3k
views
Answer: A: Quality metrics of ChIP-seq BAM files
updated 4.5 years ago by 43k • written 8.7 years ago by ★ 3.9k
2
votes
0
replies
2.4k
views
Answer: A: heatmap.2 keeps default settings despite specified
updated 4.6 years ago by 43k • written 8.9 years ago by ★ 3.9k
0
votes
2
replies
5.5k
views
Answer: A: Reordering the bam file
updated 4.6 years ago by 43k • written 9.7 years ago by ★ 3.9k
0
votes
1
reply
3.1k
views
Comment: C: SAM File target extraction
updated 4.6 years ago by 43k • written 9.8 years ago by ★ 3.9k
0
votes
1
reply
3.1k
views
Answer: A: SAM File target extraction
updated 4.6 years ago by 43k • written 9.8 years ago by ★ 3.9k
0
votes
1
reply
12k
views
Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
updated 4.6 years ago by 43k • written 10.0 years ago by ★ 3.9k
0
votes
0
replies
8.4k
views
Comment: C: Ucsc Mysql Query
updated 4.7 years ago by 43k • written 9.7 years ago by ★ 3.9k
424 results • Page 3 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6