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2.2k
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Answer: Answer: HTSlib threads when ingesting large bgzipped FASTA
7 months ago by Erik Garrison ★ 2.4k
16
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3
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12k
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Tool: Vcflib Documentation
vcf
updated 2.4 years ago by 45k • written 12.6 years ago by ★ 2.4k
3
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1
reply
5.1k
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Answer: A: How To Represent Two Different Indels At The Same Position In A Multisample Vcf?
updated 5.9 years ago by 45k • written 12.1 years ago by ★ 2.4k
0
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0
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4.6k
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Answer: A: Unmerge Vcfs
updated 5.9 years ago by 45k • written 12.1 years ago by ★ 2.4k
1
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0
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3.3k
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Answer: A: Gatk Ouput : Duplication On Same Position
updated 5.9 years ago by 45k • written 12.1 years ago by ★ 2.4k
3
votes
1
reply
16k
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Answer: A: Indel Left/Right Alignment
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 2.4k
3
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0
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2.7k
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Answer: Answer: Easy to use local assembly programs ?
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 2.4k
9
votes
1
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20k
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Answer: A: Comparing Genotypes In Two Vcf Files
updated 6.1 years ago by 45k • written 12.9 years ago by ★ 2.4k
1
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0
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4.6k
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Answer: A: Snps And Indels In Homozygous Genomes
updated 6.1 years ago by 45k • written 12.9 years ago by ★ 2.4k
0
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0
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35k
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Comment: C: C/C++ Libraries For Bioinformatics?
updated 6.1 years ago by 45k • written 15.0 years ago by ★ 2.4k
0
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1
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2.6k
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Comment: C: supporting vg users on biostars
6.1 years ago by Erik Garrison ★ 2.4k
8
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4
replies
2.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 2.4 years ago by 45k • written 6.1 years ago by ★ 2.4k
4
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0
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6.0k
views
Answer: A: Indel Detection For 454 Resequencing
updated 6.2 years ago by 45k • written 15.0 years ago by ★ 2.4k
23
votes
0
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210k
views
Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
updated 7.1 years ago by 45k • written 12.9 years ago by ★ 2.4k
33
votes
9
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34k
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Answer: A: What Methods Do You Use For In/Del/Snp Calling?
updated 7.2 years ago by 45k • written 15.0 years ago by ★ 2.4k
0
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0
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2.7k
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Comment: C: Does The Vcffilter Tool Work On String Type Info Tags?
11.1 years ago by Erik Garrison ★ 2.4k
1
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0
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9.3k
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Answer: A: Get Insertion / Deletion Count From Vcf
11.9 years ago by Erik Garrison ★ 2.4k
0
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0
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19k
views
Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
12.0 years ago by Erik Garrison ★ 2.4k
21
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2
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24k
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Answer: A: Filters/Quality For Vcf Generated By Freebayes
12.0 years ago by Erik Garrison ★ 2.4k
0
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0
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9.7k
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Comment: C: What License Do You Use When You Release Code And Data?
12.0 years ago by Erik Garrison ★ 2.4k
2
votes
0
replies
16k
views
Answer: A: How To Get A List Of All Correlated Snps (In Ld) With Another List Of Snps?
12.0 years ago by Erik Garrison ★ 2.4k
2
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0
replies
6.2k
views
Answer: A: Snp Calling Of Tcga Data Using Samtools
12.0 years ago by Erik Garrison ★ 2.4k
2
votes
0
replies
40k
views
Comment: C: Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs D
12.0 years ago by Erik Garrison ★ 2.4k
0
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0
replies
20k
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Comment: C: Error: Eof Marker Is Absent When Processing A Bam File
12.0 years ago by Erik Garrison ★ 2.4k
0
votes
1
reply
7.8k
views
Answer: A: Bam To Bed With Read Nucleotide Sequences
12.0 years ago by Erik Garrison ★ 2.4k
3
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1
reply
4.5k
views
Answer: A: Variant Calling From Single Cell Sequencing Data?
12.0 years ago by Erik Garrison ★ 2.4k
0
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0
replies
34k
views
Comment: C: What Methods Do You Use For In/Del/Snp Calling?
12.0 years ago by Erik Garrison ★ 2.4k
0
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2
replies
21k
views
Comment: C: Sample Sam File
12.0 years ago by Erik Garrison ★ 2.4k
0
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1
reply
19k
views
Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
12.1 years ago by Erik Garrison ★ 2.4k
0
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0
replies
4.1k
views
Comment: C: Local Realignment And Local De Novo Assembly Software
12.1 years ago by Erik Garrison ★ 2.4k
3
votes
0
replies
6.3k
views
Answer: A: Massive Snp Calling From Hundreds Of Bacterial Genomes
12.1 years ago by Erik Garrison ★ 2.4k
0
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0
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13k
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Comment: C: Understanding Vcf Output From Mpileup
12.1 years ago by Erik Garrison ★ 2.4k
3
votes
0
replies
5.2k
views
Answer: A: Freebayes And Mpileup Filtering Query
12.4 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
18k
views
Answer: A: Vcftools: Filtering By Multiple Regions (--Positions Flag?)
12.6 years ago by Erik Garrison ★ 2.4k
18
votes
4
replies
112k
views
Answer: A: Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
12.6 years ago by Erik Garrison ★ 2.4k
0
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1
reply
8.4k
views
Comment: C: Short Read Aligners/ Snp Calling Comparison
12.7 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
12k
views
Answer: A: How To Detect And Query Poly-Allelic Snps?
12.7 years ago by Erik Garrison ★ 2.4k
0
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0
replies
21k
views
Comment: C: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Thresh
12.7 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
3.5k
views
Answer: A: Concern On Tumor Samples With Mixed Cell Population
12.7 years ago by Erik Garrison ★ 2.4k
0
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0
replies
34k
views
Comment: C: What Methods Do You Use For In/Del/Snp Calling?
12.8 years ago by Erik Garrison ★ 2.4k
3
votes
0
replies
3.1k
views
Answer: A: Predicting Biologically Significant Snps
12.8 years ago by Erik Garrison ★ 2.4k
4
votes
0
replies
6.2k
views
Answer: A: Haloplex & Allele Calling
12.8 years ago by Erik Garrison ★ 2.4k
0
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0
replies
5.3k
views
Comment: C: Vcf - Showing Data For Non-Variant Positions As Well As Snps
12.8 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
16k
views
Comment: C: Best Practice On Variant Discovery For Bacteria?
12.9 years ago by Erik Garrison ★ 2.4k
0
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0
replies
3.7k
views
Comment: C: Searching For A Common Pattern In A Set Of Dna Sequences
12.9 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
4.3k
views
Answer: A: Are 1000G Snps Represented In Dbsnp?
12.9 years ago by Erik Garrison ★ 2.4k
0
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0
replies
9.5k
views
Answer: A: Vcf Format And Filtering
12.9 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
5.3k
views
Comment: C: How To Detect Overlaping Indels In Vcf File?
12.9 years ago by Erik Garrison ★ 2.4k
7
votes
0
replies
7.2k
views
Answer: A: Vcf Programming Language Api'S / Parsers Available?
12.9 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
5.4k
views
Answer: A: Intronic Snp Functional Annotation
12.9 years ago by Erik Garrison ★ 2.4k
76 results • Page 1 of 2
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