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2
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0
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11k
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Answer: Answer: fpkm to tpm conversion
3 months ago by DareDevil ★ 4.3k
0
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0
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789
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Answer: Answer: How to remove binary files which are installed into /usr/local/bin
3 months ago by DareDevil ★ 4.3k
2
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0
replies
379
views
Answer: Answer: identify genes
3 months ago by DareDevil ★ 4.3k
2
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1
reply
756
views
Answer: Answer: Reference genome, BWA and right algorithm
3 months ago by DareDevil ★ 4.3k
2
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0
replies
5.8k
views
Answer: Answer: Trimming by fastp for multiple PE fastq.gz files using shell script
4 months ago by DareDevil ★ 4.3k
4
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3
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4.0k
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Answer: Answer: Convert FPKM to TPM in R
3 months ago by DareDevil ★ 4.3k
3
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0
replies
524
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Answer: Answer: How to interpret the Variant Allele Frequency??
6 months ago by DareDevil ★ 4.3k
2
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0
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473
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Answer: Answer: I need help with univariate logistic regression in a set of microarray data
updated 6 months ago by 43k • written 6 months ago by ★ 4.3k
3
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1
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977
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Answer: Answer: Number of genes covered in WES
9 months ago by DareDevil ★ 4.3k
4
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1
reply
18k
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Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
updated 7 months ago by 43k • written 9 months ago by ★ 4.3k
4
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1
reply
886
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
9 months ago by DareDevil ★ 4.3k
4
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0
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886
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
9 months ago by DareDevil ★ 4.3k
2
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0
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37k
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Answer: Answer: generating genome indexes with STAR
9 months ago by DareDevil ★ 4.3k
2
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0
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2.3k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
9 months ago by DareDevil ★ 4.3k
3
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0
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686
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Answer: Answer: Is reciprocal best hit method applicable for non-coding RNA to find orthologs?
9 months ago by DareDevil ★ 4.3k
5
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1
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853
views
Answer: Answer: Counting distance between kmer instances in a sequence
9 months ago by DareDevil ★ 4.3k
2
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0
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2.5k
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Answer: Answer: Single end RNAseq data strandedness infer-experiment-py
9 months ago by DareDevil ★ 4.3k
5
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0
replies
730
views
Answer: Answer: drug sensitivity prediction
10 months ago by DareDevil ★ 4.3k
2
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1
reply
34k
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Answer: Answer: Generating consensus sequence from bam file
10 months ago by DareDevil ★ 4.3k
2
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1
reply
1.4k
views
Answer: Answer: DESeq2 multiple conditions, time points and sample types
12 months ago by DareDevil ★ 4.3k
6
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1
reply
2.7k
views
Answer: Answer: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 12 months ago by 43k • written 12 months ago by ★ 4.3k
5
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0
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1.3k
views
Answer: Answer: How to Remove Sample Names from Heatmap
13 months ago by DareDevil ★ 4.3k
2
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0
replies
3.4k
views
Answer: Answer: Graph using corrplot for multiple sets of data
14 months ago by DareDevil ★ 4.3k
9
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1
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8.1k
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Answer: Answer: CPM or TPM in GSEA analysis
17 months ago by DareDevil ★ 4.3k
3
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0
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3.0k
views
Answer: Answer: strandness of paired-end data
17 months ago by DareDevil ★ 4.3k
5
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0
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12k
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Answer: Answer: combining quantification (featureCounts) result files into a single dataset
18 months ago by DareDevil ★ 4.3k
2
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0
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7.5k
views
Answer: Answer: Featurecounts to DESEq2 - How to merge biological replicates?
18 months ago by DareDevil ★ 4.3k
2
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0
replies
2.1k
views
Answer: Answer: STAR alignment in a full directory
18 months ago by DareDevil ★ 4.3k
2
votes
0
replies
4.4k
views
Answer: Answer: How to run STAR with multiple files
18 months ago by DareDevil ★ 4.3k
4
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0
replies
18k
views
Answer: Answer: TrimGalore! on multiple paired fastq files
18 months ago by DareDevil ★ 4.3k
5
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1
reply
1.2k
views
Answer: Answer: RNA Seq HTSeq download GDC portal
2.1 years ago by DareDevil ★ 4.3k
2
votes
0
replies
31k
views
Answer: Answer: Mapping Mouse gene names to Human gene names
2.1 years ago by DareDevil ★ 4.3k
6
votes
0
replies
1.6k
views
Answer: Answer: How do we deal with `MIXED` type variants in VQSR mode of Variant filtering ?
2.2 years ago by DareDevil ★ 4.3k
2
votes
0
replies
6.8k
views
Answer: Answer: Running featureCounts separately for each sample and merging results
2.2 years ago by DareDevil ★ 4.3k
5
votes
0
replies
6.4k
views
Answer: Answer: Split multiallelic SNPs to biallelic from vcf
2.2 years ago by DareDevil ★ 4.3k
1
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1
reply
1.0k
views
Answer: Answer: METABRIC sample IDs
2.8 years ago by DareDevil ★ 4.3k
3
votes
2
replies
3.0k
views
Answer: Answer: Keep values from VCF file into Ensembl VEP annotation
3.1 years ago by DareDevil ★ 4.3k
2
votes
1
reply
2.5k
views
Answer: Answer: Another infer_experiment.py interpretation question
18 months ago by DareDevil ★ 4.3k
3
votes
0
replies
9.6k
views
Answer: Answer: STAR alignment command.
3.1 years ago by DareDevil ★ 4.3k
5
votes
1
reply
13k
views
Answer: A: Bash scripting FastQC for multiple fastq files in multiple directories
3.1 years ago by DareDevil ★ 4.3k
2
votes
0
replies
5.5k
views
Answer: A: [mem_sam_pe] paired reads have different names. Without -p
3.2 years ago by DareDevil ★ 4.3k
1
vote
0
replies
13k
views
Answer: Answer: Bioinformatics Journal with no publishing fees?
updated 2.3 years ago by 43k • written 3.2 years ago by ★ 4.3k
2
votes
0
replies
3.0k
views
Answer: A: Is it possible to run haplotypecaller in gnu parallel ?
3.3 years ago by DareDevil ★ 4.3k
5
votes
0
replies
1.2k
views
Answer: A: how to unique a file row-wise?
3.3 years ago by DareDevil ★ 4.3k
8
votes
1
reply
1.8k
views
Answer: A: Recalibrating variants in GATK4.1 as compared to GATK3.7
3.3 years ago by DareDevil ★ 4.3k
2
votes
0
replies
2.1k
views
Answer: A: How to delete a node row in the node table in cytoscape
3.3 years ago by DareDevil ★ 4.3k
6
votes
0
replies
2.2k
views
Answer: A: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
3.3 years ago by DareDevil ★ 4.3k
4
votes
1
reply
6.1k
views
Answer: A: Combine two VCF files with GATK4
3.3 years ago by DareDevil ★ 4.3k
5
votes
2
replies
4.9k
views
Answer: A: GATK4 VariantRecalibrator resource error
3.3 years ago by DareDevil ★ 4.3k
6
votes
1
reply
1.6k
views
Answer: A: different IDs conversion to Gene ID/symbol
3.4 years ago by DareDevil ★ 4.3k
53 results • Page 1 of 2
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