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Issue with Fetching Population Allele Frequency in gnomAD GraphQL API
allelle frequency api GraphQL gnomad
3 months ago by DareDevil ★ 4.4k
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9.0k
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Answer: Answer: Getting sample information from GEO
3 months ago by DareDevil ★ 4.4k
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0
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685
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Comment: Comment: Merging featureCounts output for different species
4 months ago by DareDevil ★ 4.4k
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0
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633
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Comment: Comment: What is the next step after getting the raw counts matrix for RNA-seq data?
5 months ago by DareDevil ★ 4.4k
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0
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1.0k
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Comment: Comment: Adding p value above plot
5 months ago by DareDevil ★ 4.4k
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0
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1.9k
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Comment: Comment: drug sensitivity prediction
6 months ago by DareDevil ★ 4.4k
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0
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426
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Comment: Comment: Detecting genomic signatures of drug resistance breast cancer in transcriptomic
7 months ago by DareDevil ★ 4.4k
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1.7k
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Comment: Comment: Splitting of VCF file of CSQ field in the INFO column to tabular format.
10 months ago by DareDevil ★ 4.4k
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1
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28k
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Comment: Comment: What is the best way to rank genes for GSEA?
10 months ago by DareDevil ★ 4.4k
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1
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1.1k
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Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
10 months ago by DareDevil ★ 4.4k
2
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5
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1.1k
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How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
R Peak ChIP-seq
updated 10 months ago by 88k • written 10 months ago by ★ 4.4k
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8.5k
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Comment: Comment: Download Hg18 Snp Database
10 months ago by DareDevil ★ 4.4k
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0
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1.6k
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Answer: Answer: Cibersort input data
11 months ago by DareDevil ★ 4.4k
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0
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387
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Can a Binary Signature Matrix Be Used in CIBERSORT for Deconvolution?
regression svm CIBERSORT svr
11 months ago by DareDevil ★ 4.4k
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1.3k
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Comment: Comment: Understanding how to get enrichment score in GSEA software from broad institute
11 months ago by DareDevil ★ 4.4k
1
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2
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695
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How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using Code?
tabix codons vcf variants gatk
updated 11 months ago by 166k • written 11 months ago by ★ 4.4k
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1
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972
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How to annoate the probe id to genes in Affymetrix Human Gene 2.0 ST Array [transcript (gene) version ?
biomart GEO microarray annotation
updated 11 months ago by ▴ 40 • written 11 months ago by ★ 4.4k
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0
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7.0k
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Answer: Answer: DESeq2 vst function error
12 months ago by DareDevil ★ 4.4k
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0
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428
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How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
metabolomics gsea pathways gmt
12 months ago by DareDevil ★ 4.4k
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0
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28k
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Comment: Comment: What is the best way to rank genes for GSEA?
12 months ago by DareDevil ★ 4.4k
1
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2
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28k
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Comment: Comment: What is the best way to rank genes for GSEA?
12 months ago by DareDevil ★ 4.4k
3
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1
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1.1k
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What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated 15 months ago by ▴ 20 • written 2.8 years ago by ★ 4.4k
2
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0
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13k
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Answer: Answer: fpkm to tpm conversion
18 months ago by DareDevil ★ 4.4k
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0
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3.7k
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Answer: Answer: How to remove binary files which are installed into /usr/local/bin
18 months ago by DareDevil ★ 4.4k
7
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2
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1.4k
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samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in a single block )
bam samtools hisat2
updated 18 months ago by ▴ 690 • written 18 months ago by ★ 4.4k
1
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0
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1.9k
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Comment: Comment: Survival Analysis for RNASeqV2 processed by PAM50 prediction subtype method
18 months ago by DareDevil ★ 4.4k
1
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0
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21k
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Comment: Comment: HISAT2 command help
18 months ago by DareDevil ★ 4.4k
2
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0
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839
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Answer: Answer: identify genes
18 months ago by DareDevil ★ 4.4k
2
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1
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1.6k
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Answer: Answer: Reference genome, BWA and right algorithm
18 months ago by DareDevil ★ 4.4k
2
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0
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7.4k
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Answer: Answer: Trimming by fastp for multiple PE fastq.gz files using shell script
19 months ago by DareDevil ★ 4.4k
2
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4
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1.2k
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How should I run ssgsea analysis ?
functional TPM enrichment gsea ssgsea
updated 19 months ago by 45k • written 19 months ago by ★ 4.4k
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0
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8.3k
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Comment: Comment: Convert FPKM to TPM in R
20 months ago by DareDevil ★ 4.4k
4
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3
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8.3k
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Answer: Answer: Convert FPKM to TPM in R
18 months ago by DareDevil ★ 4.4k
3
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1
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933
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How will you perform batch correction in DESeq2 when you don't have any group information?
batch-correction DESeq2
updated 20 months ago by 45k • written 20 months ago by ★ 4.4k
3
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0
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937
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Answer: Answer: How to interpret the Variant Allele Frequency??
21 months ago by DareDevil ★ 4.4k
2
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0
replies
866
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Answer: Answer: I need help with univariate logistic regression in a set of microarray data
updated 21 months ago by 45k • written 21 months ago by ★ 4.4k
6
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1
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748
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How to retrieve sample informations from given ID from Sequence Read Archives?
eutils SRA
updated 20 months ago by 45k • written 22 months ago by ★ 4.4k
2
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0
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7.5k
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Comment: Comment: bcftools multiallelic split not working
updated 22 months ago by 45k • written 22 months ago by ★ 4.4k
2
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0
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2.0k
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Comment: Comment: Number of genes covered in WES
23 months ago by DareDevil ★ 4.4k
2
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0
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497
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How to perform functional enrichment of Metabolites?
PerformPSEA metaboanalyst GSEA metabolites
23 months ago by DareDevil ★ 4.4k
3
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1
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2.0k
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Answer: Answer: Number of genes covered in WES
23 months ago by DareDevil ★ 4.4k
2
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1
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1.4k
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Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
24 months ago by DareDevil ★ 4.4k
7
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4
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1.4k
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Are there any ways to delete multiple jobs at Ensembl VEP?
api ensembl vep
updated 23 months ago by ★ 2.4k • written 24 months ago by ★ 4.4k
4
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1
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21k
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Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
updated 22 months ago by 45k • written 2.0 years ago by ★ 4.4k
3
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0
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1.7k
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Comment: Comment: GOSemSim - difference between mgeneSim and mgoSim
2.0 years ago by DareDevil ★ 4.4k
4
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1
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1.7k
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
2.0 years ago by DareDevil ★ 4.4k
4
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0
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1.7k
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
2.0 years ago by DareDevil ★ 4.4k
2
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0
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42k
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Answer: Answer: generating genome indexes with STAR
2.0 years ago by DareDevil ★ 4.4k
2
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0
replies
4.2k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
2.0 years ago by DareDevil ★ 4.4k
1
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0
replies
2.3k
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Comment: Comment: Does anyone know what cmpress is?
2.0 years ago by DareDevil ★ 4.4k
245 results • Page 1 of 5
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