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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
8 weeks ago by DareDevil ★ 4.4k
2
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2
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3.8k
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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
RNAseq replicates DESeq2 EdgeR
8 weeks ago by DareDevil ★ 4.4k
2
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0
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7.0k
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Answer: Answer: Combine a directory of GVCF files with gatk CombineGVCFs
3 months ago by DareDevil ★ 4.4k
0
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0
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637
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Issue with Fetching Population Allele Frequency in gnomAD GraphQL API
allelle frequency api GraphQL gnomad
7 months ago by DareDevil ★ 4.4k
0
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0
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11k
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Answer: Answer: Getting sample information from GEO
7 months ago by DareDevil ★ 4.4k
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0
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805
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Comment: Comment: Merging featureCounts output for different species
8 months ago by DareDevil ★ 4.4k
0
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0
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860
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Comment: Comment: What is the next step after getting the raw counts matrix for RNA-seq data?
9 months ago by DareDevil ★ 4.4k
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0
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1.3k
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Comment: Comment: Adding p value above plot
9 months ago by DareDevil ★ 4.4k
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0
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2.3k
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Comment: Comment: drug sensitivity prediction
9 months ago by DareDevil ★ 4.4k
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0
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534
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Comment: Comment: Detecting genomic signatures of drug resistance breast cancer in transcriptomic
11 months ago by DareDevil ★ 4.4k
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0
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2.2k
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Comment: Comment: Splitting of VCF file of CSQ field in the INFO column to tabular format.
13 months ago by DareDevil ★ 4.4k
0
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1
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30k
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Comment: Comment: What is the best way to rank genes for GSEA?
14 months ago by DareDevil ★ 4.4k
0
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1
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1.3k
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Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
14 months ago by DareDevil ★ 4.4k
2
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5
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1.3k
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How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
R Peak ChIP-seq
updated 14 months ago by 89k • written 14 months ago by ★ 4.4k
0
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0
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8.8k
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Comment: Comment: Download Hg18 Snp Database
14 months ago by DareDevil ★ 4.4k
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0
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1.9k
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Answer: Answer: Cibersort input data
14 months ago by DareDevil ★ 4.4k
0
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0
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474
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Can a Binary Signature Matrix Be Used in CIBERSORT for Deconvolution?
regression svm CIBERSORT svr
14 months ago by DareDevil ★ 4.4k
0
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0
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1.4k
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Comment: Comment: Understanding how to get enrichment score in GSEA software from broad institute
14 months ago by DareDevil ★ 4.4k
1
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2
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803
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How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using Code?
tabix codons vcf variants gatk
updated 14 months ago by 166k • written 14 months ago by ★ 4.4k
0
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1
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1.2k
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How to annoate the probe id to genes in Affymetrix Human Gene 2.0 ST Array [transcript (gene) version ?
biomart GEO microarray annotation
updated 15 months ago by ▴ 40 • written 15 months ago by ★ 4.4k
0
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0
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7.5k
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Answer: Answer: DESeq2 vst function error
15 months ago by DareDevil ★ 4.4k
0
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0
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506
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How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
metabolomics gsea pathways gmt
15 months ago by DareDevil ★ 4.4k
0
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0
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30k
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Comment: Comment: What is the best way to rank genes for GSEA?
16 months ago by DareDevil ★ 4.4k
1
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2
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30k
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Comment: Comment: What is the best way to rank genes for GSEA?
16 months ago by DareDevil ★ 4.4k
3
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1
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1.3k
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What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated 18 months ago by ▴ 20 • written 3.1 years ago by ★ 4.4k
2
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0
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14k
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Answer: Answer: fpkm to tpm conversion
21 months ago by DareDevil ★ 4.4k
0
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0
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4.2k
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Answer: Answer: How to remove binary files which are installed into /usr/local/bin
21 months ago by DareDevil ★ 4.4k
7
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2
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1.6k
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samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in a single block )
bam samtools hisat2
updated 21 months ago by ▴ 690 • written 21 months ago by ★ 4.4k
1
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0
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2.0k
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Comment: Comment: Survival Analysis for RNASeqV2 processed by PAM50 prediction subtype method
21 months ago by DareDevil ★ 4.4k
1
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0
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22k
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Comment: Comment: HISAT2 command help
21 months ago by DareDevil ★ 4.4k
2
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0
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959
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Answer: Answer: identify genes
22 months ago by DareDevil ★ 4.4k
2
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1
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1.8k
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Answer: Answer: Reference genome, BWA and right algorithm
22 months ago by DareDevil ★ 4.4k
2
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0
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7.7k
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Answer: Answer: Trimming by fastp for multiple PE fastq.gz files using shell script
22 months ago by DareDevil ★ 4.4k
2
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4
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1.4k
views
How should I run ssgsea analysis ?
functional TPM enrichment gsea ssgsea
updated 22 months ago by 45k • written 23 months ago by ★ 4.4k
0
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0
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9.2k
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Comment: Comment: Convert FPKM to TPM in R
23 months ago by DareDevil ★ 4.4k
4
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3
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9.2k
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Answer: Answer: Convert FPKM to TPM in R
21 months ago by DareDevil ★ 4.4k
3
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1
reply
1.0k
views
How will you perform batch correction in DESeq2 when you don't have any group information?
batch-correction DESeq2
updated 24 months ago by 45k • written 24 months ago by ★ 4.4k
3
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0
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1.1k
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Answer: Answer: How to interpret the Variant Allele Frequency??
2.0 years ago by DareDevil ★ 4.4k
2
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0
replies
987
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Answer: Answer: I need help with univariate logistic regression in a set of microarray data
updated 2.1 years ago by 45k • written 2.1 years ago by ★ 4.4k
6
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1
reply
869
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How to retrieve sample informations from given ID from Sequence Read Archives?
eutils SRA
updated 23 months ago by 45k • written 2.1 years ago by ★ 4.4k
2
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0
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8.5k
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Comment: Comment: bcftools multiallelic split not working
updated 2.1 years ago by 45k • written 2.2 years ago by ★ 4.4k
2
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0
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2.2k
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Comment: Comment: Number of genes covered in WES
2.2 years ago by DareDevil ★ 4.4k
2
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0
replies
586
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How to perform functional enrichment of Metabolites?
PerformPSEA metaboanalyst GSEA metabolites
2.2 years ago by DareDevil ★ 4.4k
3
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1
reply
2.2k
views
Answer: Answer: Number of genes covered in WES
2.2 years ago by DareDevil ★ 4.4k
2
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1
reply
1.6k
views
Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
2.3 years ago by DareDevil ★ 4.4k
7
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4
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1.6k
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Are there any ways to delete multiple jobs at Ensembl VEP?
api ensembl vep
updated 2.3 years ago by ★ 2.4k • written 2.3 years ago by ★ 4.4k
4
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1
reply
21k
views
Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
updated 2.1 years ago by 45k • written 2.3 years ago by ★ 4.4k
3
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0
replies
1.9k
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Comment: Comment: GOSemSim - difference between mgeneSim and mgoSim
2.3 years ago by DareDevil ★ 4.4k
4
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1
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1.9k
views
Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
2.3 years ago by DareDevil ★ 4.4k
4
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0
replies
1.9k
views
Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
2.3 years ago by DareDevil ★ 4.4k
248 results • Page 1 of 5
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