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239
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Comment: Comment: just one plot appears in the shiny application not all
11 days ago by bkleiboeker ▴ 320
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171
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Comment: Comment: A problem about saving Rstudio data matrix
15 days ago by bkleiboeker ▴ 320
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1
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472
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Comment: Comment: Inclusion of R script in shiny application
17 days ago by bkleiboeker ▴ 320
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2
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472
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Answer: Answer: Inclusion of R script in shiny application
18 days ago by bkleiboeker ▴ 320
2
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412
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Comment: Comment: Languages for Bioinformatics
21 days ago by bkleiboeker ▴ 320
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299
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Comment: Comment: how to use make.names commnad in r while using rbind function
22 days ago by bkleiboeker ▴ 320
2
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258
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Answer: Answer: How to make line graph with circles in R
22 days ago by bkleiboeker ▴ 320
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519
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Comment: Comment: Merge common elements in R
5 weeks ago by bkleiboeker ▴ 320
1
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528
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Comment: Comment: SVA vs limma model
5 weeks ago by bkleiboeker ▴ 320
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1
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528
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Answer: Answer: SVA vs limma model
5 weeks ago by bkleiboeker ▴ 320
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528
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Comment: Comment: SVA vs limma model
5 weeks ago by bkleiboeker ▴ 320
3
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210
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Answer: Answer: Filtering column in R
5 weeks ago by bkleiboeker ▴ 320
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1
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357
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Comment: Comment: SRA toolkit
5 weeks ago by bkleiboeker ▴ 320
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668
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
6 weeks ago by bkleiboeker ▴ 320
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664
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Comment: Comment: Limma for batch effect correction
6 weeks ago by bkleiboeker ▴ 320
0
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2
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668
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
6 weeks ago by bkleiboeker ▴ 320
0
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169
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Answer: Answer: differential expression analysis
updated 6 weeks ago by 38k • written 6 weeks ago by ▴ 320
0
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664
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Comment: Comment: Limma for batch effect correction
6 weeks ago by bkleiboeker ▴ 320
1
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172
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Comment: Comment: Error while running survival analysis ?
6 weeks ago by bkleiboeker ▴ 320
1
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220
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Comment: Comment: Limma contrasts for DEGs
7 weeks ago by bkleiboeker ▴ 320
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449
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Answer: Answer: Why am I getting only one common value when comparing two excel files?
8 weeks ago by bkleiboeker ▴ 320
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553
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Comment: Comment: Heatmap by group in R
8 weeks ago by bkleiboeker ▴ 320
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1
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331
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Answer: Answer: Export glm and manova results from R in a publishable table
8 weeks ago by bkleiboeker ▴ 320
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1
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471
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Comment: Comment: Saccharomyces cerevisiae - mapping against transcriptome
11 weeks ago by bkleiboeker ▴ 320
0
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302
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Comment: Comment: Limma design matrix to find which interaction is significant
11 weeks ago by bkleiboeker ▴ 320
1
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1
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823
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Comment: Comment: Proteomic Statistics - FDR vs p-value
11 weeks ago by bkleiboeker ▴ 320
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715
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Comment: Comment: R is assigning unique identifier to the same column names when reading in as a d
11 weeks ago by bkleiboeker ▴ 320
0
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0
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389
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Answer: Answer: CompleX heat Map
updated 12 weeks ago by 38k • written 12 weeks ago by ▴ 320
2
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1
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811
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Comment: Comment: Use tximport to merge and transform the transcript counts to gene counts
12 weeks ago by bkleiboeker ▴ 320
4
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1
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811
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Answer: Answer: Use tximport to merge and transform the transcript counts to gene counts
12 weeks ago by bkleiboeker ▴ 320
0
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0
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453
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Comment: Comment: What can I do with pan-cancer RNA-seq data that only has FPKM value?
12 weeks ago by bkleiboeker ▴ 320
0
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0
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651
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Comment: Comment: Pan-cancer RNA-seq data normalization
12 weeks ago by bkleiboeker ▴ 320
3
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923
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Comment: Comment: R programmin RNA seq
12 weeks ago by bkleiboeker ▴ 320
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409
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Comment: Comment: using published genomic data
12 weeks ago by bkleiboeker ▴ 320
0
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799
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Comment: Comment: How do I subset data in R with a list of variable names?
3 months ago by bkleiboeker ▴ 320
0
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799
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Comment: Comment: How do I subset data in R with a list of variable names?
3 months ago by bkleiboeker ▴ 320
0
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1.2k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
3 months ago by bkleiboeker ▴ 320
0
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1
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1.2k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
3 months ago by bkleiboeker ▴ 320
11
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8
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1.2k
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How to make contrasts to find genes DE in one experimental group but NOT in others?
edgeR limma matrix design R
updated 12 weeks ago by ★ 5.6k • written 3 months ago by ▴ 320
0
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0
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1.2k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
3 months ago by bkleiboeker ▴ 320
0
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0
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439
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Comment: Comment: Strange results from limma output
3 months ago by bkleiboeker ▴ 320
1
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1
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265
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Comment: Comment: warning when installing "AnnotationDbi"
4 months ago by bkleiboeker ▴ 320
0
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1
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315
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Comment: Comment: qPCR assay Triplicate Ct SD
4 months ago by bkleiboeker ▴ 320
0
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1
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575
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Comment: Comment: Comparing multiple groups in edgeR
4 months ago by bkleiboeker ▴ 320
1
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0
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651
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Answer: Answer: Pan-cancer RNA-seq data normalization
4 months ago by bkleiboeker ▴ 320
0
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1
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409
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Comment: Comment: Design matrix for microarray experiment with covariates, cofactors, multiple fa
8 months ago by bkleiboeker ▴ 320
2
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3
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409
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Design matrix for microarray experiment with covariates, cofactors, multiple factors, and one treatment?
mircoarray R matrix design limma
updated 8 months ago by 2.2k • written 8 months ago by ▴ 320
0
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0
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2.9k
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Answer: Answer: What is the Sleuth intercept and how can Sleuth be used when you have >2 treatme
18 months ago by bkleiboeker ▴ 320
0
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0
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1.8k
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Answer: Answer: RNA-seq gene list - HOMER Gene based analysis
21 months ago by bkleiboeker ▴ 320
0
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1
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1.1k
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Comment: C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
2.2 years ago by bkleiboeker ▴ 320
55 results • Page 1 of 2
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