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169
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Answer: Answer: Correct VCF header
2 days ago by tomas4482 ▴ 420
0
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1
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313
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Don't understand three modes of TCGA STAR 2-pass
GDC RNA-seq TCGA
updated 5 weeks ago by ★ 1.2k • written 5 weeks ago by ▴ 420
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2
replies
329
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ascp Session stop time out
ena aspera
updated 8 weeks ago by 145k • written 8 weeks ago by ▴ 420
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1
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329
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Comment: Comment: ascp Session stop time out
8 weeks ago by tomas4482 ▴ 420
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1
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368
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Comment: Comment: Seurat not creating nCount_RNA and nFeature_RNA
8 weeks ago by tomas4482 ▴ 420
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0
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369
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
10 weeks ago by tomas4482 ▴ 420
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0
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369
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
10 weeks ago by tomas4482 ▴ 420
1
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4
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369
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Subset VCF to exon region but still get intron_variant annotation
Ensembl vcf VEP vcftools
updated 10 weeks ago by ★ 1.3k • written 10 weeks ago by ▴ 420
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0
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607
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Comment: Comment: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
12 weeks ago by tomas4482 ▴ 420
1
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1
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607
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Answer: Answer: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
12 weeks ago by tomas4482 ▴ 420
0
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0
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2.1k
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Comment: Comment: What does an amino acid sequence that does not start with methionine mean?
3 months ago by tomas4482 ▴ 420
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0
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2.0k
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Comment: Comment: Problems when trying to use ensembl-vep
3 months ago by tomas4482 ▴ 420
1
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0
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165
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Producing sequence for splicing isoforms
isoform rMATs splicing alternative SplAdder
3 months ago by tomas4482 ▴ 420
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0
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879
views
Comment: Comment: could not find function "gseGO" in ClusterProfiler
14 months ago by tomas4482 ▴ 420
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1
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898
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Answer: Answer: Somatic variant calling mutect2 ctDNA liquid biopsy
15 months ago by tomas4482 ▴ 420
1
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0
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546
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Answer: Answer: How can I make a similar mutated gene expression figure with TCGA data
16 months ago by tomas4482 ▴ 420
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0
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1.3k
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Comment: Comment: Seurat Metadata to Dataframe Manipulation
18 months ago by tomas4482 ▴ 420
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1
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1.3k
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Answer: Answer: Seurat Metadata to Dataframe Manipulation
18 months ago by tomas4482 ▴ 420
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0
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1.7k
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Comment: Comment: Is it possible to split BAM without sorting it?
22 months ago by tomas4482 ▴ 420
0
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0
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585
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Answer: Answer: Batch effect removal for RNA-seq data (single-end and pair-end)
22 months ago by tomas4482 ▴ 420
0
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1
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1.7k
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Comment: Comment: Is it possible to split BAM without sorting it?
22 months ago by tomas4482 ▴ 420
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0
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1.7k
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Comment: Comment: Is it possible to split BAM without sorting it?
22 months ago by tomas4482 ▴ 420
6
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10
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1.7k
views
Is it possible to split BAM without sorting it?
samtools BAM bamtools
22 months ago by tomas4482 ▴ 420
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1
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1.7k
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Comment: Comment: Is it possible to split BAM without sorting it?
22 months ago by tomas4482 ▴ 420
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1
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1.7k
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Comment: Comment: Is it possible to split BAM without sorting it?
22 months ago by tomas4482 ▴ 420
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0
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520
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Answer: Answer: RNA-seq data from human patients with both GBM and Alzheimer's
2.0 years ago by tomas4482 ▴ 420
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0
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1.4k
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Comment: Comment: Variant identified, What next?
2.0 years ago by tomas4482 ▴ 420
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0
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1.1k
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Comment: Comment: BLAST unmapped reads from BAM
2.0 years ago by tomas4482 ▴ 420
1
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1
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1.4k
views
Answer: Answer: Variant identified, What next?
2.0 years ago by tomas4482 ▴ 420
0
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0
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1.3k
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Comment: Comment: Merging different fastq files into one folder
2.0 years ago by tomas4482 ▴ 420
0
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0
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1.3k
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Answer: Answer: Merging different fastq files into one folder
2.0 years ago by tomas4482 ▴ 420
1
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1
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3.3k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.0 years ago by tomas4482 ▴ 420
0
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1
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3.3k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.0 years ago by tomas4482 ▴ 420
1
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1
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3.3k
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Answer: Answer: How to convert a FASTQ file to FASTA file without the number of reads
2.0 years ago by tomas4482 ▴ 420
0
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0
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1.1k
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Comment: Comment: Count expression of 10x scRNA-seq after UMI extraction
2.0 years ago by tomas4482 ▴ 420
0
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5
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1.1k
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Count expression of 10x scRNA-seq after UMI extraction
featureCount subread scRNA umitools
2.0 years ago by tomas4482 ▴ 420
0
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1
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1.1k
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Comment: Comment: Count expression of 10x scRNA-seq after UMI extraction
2.0 years ago by tomas4482 ▴ 420
4
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1
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2.9k
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Answer: Answer: Installing ensembl-vep
2.0 years ago by tomas4482 ▴ 420
1
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0
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541
views
Answer: Answer: How to match tumor fastq file to normal fastq file? (I just have a set of tumor
2.1 years ago by tomas4482 ▴ 420
0
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0
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2.7k
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Comment: Comment: SRA not splitting when trying to download fastq
2.1 years ago by tomas4482 ▴ 420
1
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1
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2.7k
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Comment: Comment: SRA not splitting when trying to download fastq
2.1 years ago by tomas4482 ▴ 420
0
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0
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1.2k
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Comment: Comment: merging data; remove extra rows
2.1 years ago by tomas4482 ▴ 420
0
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1
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1.2k
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Answer: Answer: merging data; remove extra rows
2.1 years ago by tomas4482 ▴ 420
0
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0
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591
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Answer: Answer: Retrieval of specific classes from an Ontology
2.1 years ago by tomas4482 ▴ 420
0
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0
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2.7k
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Comment: Comment: SRA not splitting when trying to download fastq
2.1 years ago by tomas4482 ▴ 420
1
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1
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2.7k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.1 years ago by tomas4482 ▴ 420
0
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2
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2.7k
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Answer: Answer: SRA not splitting when trying to download fastq
2.1 years ago by tomas4482 ▴ 420
0
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0
replies
1.1k
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Comment: Comment: correlation among RNAseq and proteomics analysis
2.1 years ago by tomas4482 ▴ 420
2
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1
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1.1k
views
Answer: Answer: correlation among RNAseq and proteomics analysis
2.1 years ago by tomas4482 ▴ 420
1
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1
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4.1k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.1 years ago by tomas4482 ▴ 420
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