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323
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Answer: Answer: Correct VCF header
5 weeks ago by tomas4482 ▴ 430
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1
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348
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Don't understand three modes of TCGA STAR 2-pass
GDC RNA-seq TCGA
updated 10 weeks ago by ★ 1.2k • written 10 weeks ago by ▴ 430
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2
replies
370
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ascp Session stop time out
ena aspera
updated 3 months ago by 146k • written 3 months ago by ▴ 430
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1
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370
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Comment: Comment: ascp Session stop time out
3 months ago by tomas4482 ▴ 430
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1
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448
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Comment: Comment: Seurat not creating nCount_RNA and nFeature_RNA
3 months ago by tomas4482 ▴ 430
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0
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420
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
3 months ago by tomas4482 ▴ 430
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0
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420
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
3 months ago by tomas4482 ▴ 430
1
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4
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420
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Subset VCF to exon region but still get intron_variant annotation
Ensembl vcf VEP vcftools
updated 3 months ago by ★ 1.3k • written 3 months ago by ▴ 430
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734
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Comment: Comment: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
4 months ago by tomas4482 ▴ 430
1
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1
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734
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Answer: Answer: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
4 months ago by tomas4482 ▴ 430
0
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0
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2.3k
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Comment: Comment: What does an amino acid sequence that does not start with methionine mean?
4 months ago by tomas4482 ▴ 430
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0
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2.1k
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Comment: Comment: Problems when trying to use ensembl-vep
4 months ago by tomas4482 ▴ 430
1
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0
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179
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Producing sequence for splicing isoforms
isoform rMATs splicing alternative SplAdder
4 months ago by tomas4482 ▴ 430
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0
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902
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Comment: Comment: could not find function "gseGO" in ClusterProfiler
15 months ago by tomas4482 ▴ 430
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1
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922
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Answer: Answer: Somatic variant calling mutect2 ctDNA liquid biopsy
17 months ago by tomas4482 ▴ 430
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0
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559
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Answer: Answer: How can I make a similar mutated gene expression figure with TCGA data
18 months ago by tomas4482 ▴ 430
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0
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1.3k
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Comment: Comment: Seurat Metadata to Dataframe Manipulation
19 months ago by tomas4482 ▴ 430
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1
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1.3k
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Answer: Answer: Seurat Metadata to Dataframe Manipulation
19 months ago by tomas4482 ▴ 430
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0
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1.8k
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Comment: Comment: Is it possible to split BAM without sorting it?
24 months ago by tomas4482 ▴ 430
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0
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623
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Answer: Answer: Batch effect removal for RNA-seq data (single-end and pair-end)
24 months ago by tomas4482 ▴ 430
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1
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1.8k
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Comment: Comment: Is it possible to split BAM without sorting it?
24 months ago by tomas4482 ▴ 430
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0
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1.8k
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Comment: Comment: Is it possible to split BAM without sorting it?
24 months ago by tomas4482 ▴ 430
6
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10
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1.8k
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Is it possible to split BAM without sorting it?
samtools BAM bamtools
24 months ago by tomas4482 ▴ 430
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1
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1.8k
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Comment: Comment: Is it possible to split BAM without sorting it?
24 months ago by tomas4482 ▴ 430
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1
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1.8k
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Comment: Comment: Is it possible to split BAM without sorting it?
24 months ago by tomas4482 ▴ 430
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0
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538
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Answer: Answer: RNA-seq data from human patients with both GBM and Alzheimer's
2.1 years ago by tomas4482 ▴ 430
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0
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1.4k
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Comment: Comment: Variant identified, What next?
2.1 years ago by tomas4482 ▴ 430
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0
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1.1k
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Comment: Comment: BLAST unmapped reads from BAM
2.1 years ago by tomas4482 ▴ 430
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1
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1.4k
views
Answer: Answer: Variant identified, What next?
2.1 years ago by tomas4482 ▴ 430
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0
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1.3k
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Comment: Comment: Merging different fastq files into one folder
2.1 years ago by tomas4482 ▴ 430
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0
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1.3k
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Answer: Answer: Merging different fastq files into one folder
2.1 years ago by tomas4482 ▴ 430
1
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1
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3.4k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.1 years ago by tomas4482 ▴ 430
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1
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3.4k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.1 years ago by tomas4482 ▴ 430
1
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1
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3.4k
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Answer: Answer: How to convert a FASTQ file to FASTA file without the number of reads
2.1 years ago by tomas4482 ▴ 430
0
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0
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1.2k
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Comment: Comment: Count expression of 10x scRNA-seq after UMI extraction
2.1 years ago by tomas4482 ▴ 430
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5
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1.2k
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Count expression of 10x scRNA-seq after UMI extraction
featureCount subread scRNA umitools
2.1 years ago by tomas4482 ▴ 430
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1
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1.2k
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Comment: Comment: Count expression of 10x scRNA-seq after UMI extraction
2.1 years ago by tomas4482 ▴ 430
4
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1
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3.1k
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Answer: Answer: Installing ensembl-vep
2.1 years ago by tomas4482 ▴ 430
1
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0
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556
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Answer: Answer: How to match tumor fastq file to normal fastq file? (I just have a set of tumor
2.2 years ago by tomas4482 ▴ 430
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0
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2.9k
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Comment: Comment: SRA not splitting when trying to download fastq
2.2 years ago by tomas4482 ▴ 430
1
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1
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2.9k
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Comment: Comment: SRA not splitting when trying to download fastq
2.2 years ago by tomas4482 ▴ 430
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0
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1.3k
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Comment: Comment: merging data; remove extra rows
2.2 years ago by tomas4482 ▴ 430
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1
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1.3k
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Answer: Answer: merging data; remove extra rows
2.2 years ago by tomas4482 ▴ 430
0
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0
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611
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Answer: Answer: Retrieval of specific classes from an Ontology
2.2 years ago by tomas4482 ▴ 430
0
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0
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2.9k
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Comment: Comment: SRA not splitting when trying to download fastq
2.2 years ago by tomas4482 ▴ 430
1
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1
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2.9k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.2 years ago by tomas4482 ▴ 430
0
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2
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2.9k
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Answer: Answer: SRA not splitting when trying to download fastq
2.2 years ago by tomas4482 ▴ 430
0
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0
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1.1k
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Comment: Comment: correlation among RNAseq and proteomics analysis
2.2 years ago by tomas4482 ▴ 430
2
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1
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1.1k
views
Answer: Answer: correlation among RNAseq and proteomics analysis
2.2 years ago by tomas4482 ▴ 430
1
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1
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4.4k
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Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.2 years ago by tomas4482 ▴ 430
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