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2.8k
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Answer: A: Algorithms for finding nearest range given two lists of ranges?
7.4 years ago by chrchang523 11k
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1
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3.0k
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Comment: C: VariantsToBinaryPed tool missing from GATK4?
7.4 years ago by chrchang523 11k
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1
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3.0k
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Comment: C: VariantsToBinaryPed tool missing from GATK4?
7.4 years ago by chrchang523 11k
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1
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4.6k
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Comment: C: Cannot run KING on Mac OS X
7.4 years ago by chrchang523 11k
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3
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61k
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Comment: C: VCF to PLINK binary formats: How do conversion tools make the .fam file if no re
7.4 years ago by chrchang523 11k
3
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1
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2.9k
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Answer: A: IBD calculation indicates cryptic relatedness of 1 Individual with all others wi
7.4 years ago by chrchang523 11k
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1.8k
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Comment: C: SNP panel interrogated by KING for estimating kinship?
7.4 years ago by chrchang523 11k
3
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1.8k
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Answer: A: SNP panel interrogated by KING for kinship estimation?
7.4 years ago by chrchang523 11k
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0
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4.3k
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Answer: A: Pruning a dense SNP dataset without losing too much LD
7.4 years ago by chrchang523 11k
1
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0
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2.8k
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Answer: A: Tools to check consistency between VCF genotypes and pedigree-stated sex and fam
7.4 years ago by chrchang523 11k
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1
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22k
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Comment: C: Plink filtering with physical position using a text file
7.4 years ago by chrchang523 11k
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1
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22k
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Comment: C: Plink filtering with physical position using a text file
7.4 years ago by chrchang523 11k
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1
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22k
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Comment: C: Plink filtering with physical position using a text file
7.4 years ago by chrchang523 11k
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0
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3.1k
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Answer: A: Count SNPs per individual FAST!
7.4 years ago by chrchang523 11k
2
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1
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7.2k
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Answer: A: Convert VCF to BGEN 1.3
7.4 years ago by chrchang523 11k
1
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2
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2.4k
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Answer: A: getting unlinked variants and PCA analysis
7.4 years ago by chrchang523 11k
2
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0
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7.7k
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Answer: A: plink: vcf to ped
7.4 years ago by chrchang523 11k
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1
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3.6k
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Comment: C: Merlin format, Mach, Plink, Plink2, and best practices of snp imputation
7.4 years ago by chrchang523 11k
2
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1
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3.6k
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Comment: C: Merlin format, Mach, Plink, Plink2, and best practices of snp imputation
7.4 years ago by chrchang523 11k
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0
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1.9k
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Comment: C: Genetic variation data analysis frequently tricky problems and troubleshot
7.5 years ago by chrchang523 11k
1
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2
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2.1k
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Answer: A: 1000 Genome Project VCF file and Plink file
7.5 years ago by chrchang523 11k
1
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1
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10k
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Comment: C: gender assignment sex-check in Plink
7.5 years ago by chrchang523 11k
1
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1
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10k
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Comment: C: gender assignment sex-check in Plink
7.5 years ago by chrchang523 11k
3
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1
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6.3k
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Answer: A: Dosage data single probability to PLINK format
7.5 years ago by chrchang523 11k
2
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1
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2.5k
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Answer: A: Where to download official reference and alternative alleles from 1000 Genomes?
7.6 years ago by chrchang523 11k
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0
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8.1k
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Comment: C: Plink: compute LD between all SNP pairs
7.6 years ago by chrchang523 11k
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1
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8.1k
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Answer: A: Plink: compute LD between all SNP pairs
7.6 years ago by chrchang523 11k
1
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0
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4.3k
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Answer: A: update fam file VCF -> plink bfile
7.6 years ago by chrchang523 11k
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0
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2.4k
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Answer: A: PLINK IBD calculation for given samples against the rest of the data
7.6 years ago by chrchang523 11k
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1
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2.2k
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Answer: A: vcftools/ plink conserve phase information
7.6 years ago by chrchang523 11k
0
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0
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3.8k
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Comment: C: PLINK input files not found (adds .fam to input.bed)
7.7 years ago by chrchang523 11k
0
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1
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3.8k
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Comment: C: PLINK input files not found (adds .fam to input.bed)
7.7 years ago by chrchang523 11k
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0
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9.6k
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Comment: C: Convert vcf files with phased genotypes to standard haplotype format
7.7 years ago by chrchang523 11k
6
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1
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9.6k
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Answer: A: Convert vcf files with phased genotypes to standard haplotype format
7.7 years ago by chrchang523 11k
1
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0
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4.0k
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Answer: A: Minimac3 VCF to .gen and .sample format
7.7 years ago by chrchang523 11k
2
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0
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2.2k
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Answer: A: plink linear regression P values
7.7 years ago by chrchang523 11k
2
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2
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5.3k
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Comment: C: plink linear regression
7.7 years ago by chrchang523 11k
3
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2.5k
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Answer: A: Plink. How to create small .ped file from big .ped file?
7.8 years ago by chrchang523 11k
0
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1
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3.1k
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Answer: A: VCF with SNP- count number of 100% missing genotypes
7.8 years ago by chrchang523 11k
1
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1
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33k
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Comment: C: How do I remove duplicated by position SNPs using PLink?
updated 7.9 years ago by 45k • written 7.9 years ago by 11k
3
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1
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33k
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Comment: C: How do I remove duplicated by position SNPs using PLink?
7.9 years ago by chrchang523 11k
0
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1
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33k
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Comment: C: How do I remove duplicated by position SNPs using PLink?
7.9 years ago by chrchang523 11k
11
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1
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22k
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Answer: A: Plink filtering with physical position using a text file
7.9 years ago by chrchang523 11k
0
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0
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1.9k
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Answer: A: Non parametric quantitative genome wide association tests
7.9 years ago by chrchang523 11k
2
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1
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3.5k
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Answer: A: PLINK 1.9 mendel errors trios
7.9 years ago by chrchang523 11k
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1
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4.9k
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Comment: C: Recode to VCF with -a2-allele flag in PLINK
7.9 years ago by chrchang523 11k
3
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1
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4.3k
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Answer: A: logistic regression with PLINK
7.9 years ago by chrchang523 11k
1
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1
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20k
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Answer: A: How to convert vcf to 23andme format
8.0 years ago by chrchang523 11k
1
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1
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3.5k
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Answer: C: lgen to ped using plink
8.0 years ago by chrchang523 11k
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0
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3.2k
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Comment: C: illumina genotype reports _lgen to ped using plink
8.0 years ago by chrchang523 11k
914 results • Page 14 of 19
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