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Answer: A: Converting 0 1 2 in a format recognized by plink
9.1 years ago by chrchang523 11k
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6.1k
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Comment: C: Using Plink to remove individuals in a downloadable dataset
9.1 years ago by chrchang523 11k
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2
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6.1k
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Answer: A: How does Plink choose which SNP is Allele1 and Allele2?
9.1 years ago by chrchang523 11k
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8.9k
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Answer: A: Family ID in PED file
9.1 years ago by chrchang523 11k
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3.7k
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Answer: A: Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
9.1 years ago by chrchang523 11k
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2.1k
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Comment: C: Is it possible to get LD statistics keeping haplotype in mind?
9.1 years ago by chrchang523 11k
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Answer: A: R: read.plink Error
9.2 years ago by chrchang523 11k
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7.8k
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Comment: C: Problems with PLINK on Mac OS X
9.2 years ago by chrchang523 11k
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11k
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Comment: C: Heterozygosity by individual
9.2 years ago by chrchang523 11k
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11k
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Comment: C: Heterozygosity by individual
9.2 years ago by chrchang523 11k
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1
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11k
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Answer: A: Plink: --hardy by individual
9.2 years ago by chrchang523 11k
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6.6k
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Answer: A: Conerting vcf to 23andMe format
9.2 years ago by chrchang523 11k
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1
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4.9k
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Comment: C: Locus Zoom Issuing "No valid markers in VCF file" on a VCF created in Plink 1.9
9.3 years ago by chrchang523 11k
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1
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4.9k
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Answer: A: Locus Zoom Issuing "No valid markers in VCF file" on a VCF created in Plink 1.9
9.3 years ago by chrchang523 11k
2
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1
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2.7k
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Answer: A: Filtering data after bmerge in plink
9.3 years ago by chrchang523 11k
2
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2.4k
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Answer: A: Plink keep compound genotypes as output
9.3 years ago by chrchang523 11k
5
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2
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10k
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Answer: A: gender assignment sex-check in Plink
9.3 years ago by chrchang523 11k
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0
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6.6k
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Answer: A: PLINK linear regression unwarranted error message?
9.4 years ago by chrchang523 11k
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4.8k
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Comment: C: Recoding lgen into Ped using plink
9.5 years ago by chrchang523 11k
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4.5k
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Answer: A: Plink prune.in prune.out blank
9.7 years ago by chrchang523 11k
2
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0
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3.3k
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Answer: A: Can PLINK handle gzipped ped / map files?
9.7 years ago by chrchang523 11k
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1
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3.9k
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Comment: C: Transposed file to ped map file
9.8 years ago by chrchang523 11k
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2.2k
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Answer: Answer: `--qt-means` in plink
updated 3.1 years ago by 45k • written 9.8 years ago by 11k
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1
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4.8k
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Comment: C: Recoding lgen into Ped using plink
9.9 years ago by chrchang523 11k
3
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1
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8.9k
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Comment: C: PLINK Merge error: File write failure
9.9 years ago by chrchang523 11k
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2
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13k
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Comment: Comment: Best way to convert VCF to PLINK file format and merge chromosomes?
updated 3.0 years ago by 45k • written 10.0 years ago by 11k
1
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1
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2.4k
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Answer: Answer: Genotype frequencies Plink
updated 3.0 years ago by 45k • written 10.0 years ago by 11k
2
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1
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4.4k
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Answer: Answer: .map file for Impute2
updated 2.9 years ago by 45k • written 10.1 years ago by 11k
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0
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5.1k
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Answer: Answer: VCF genotype generator
updated 2.9 years ago by 45k • written 10.1 years ago by 11k
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0
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4.5k
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Comment: C: Allelic Distance calculation using PED format data
10.1 years ago by chrchang523 11k
3
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1
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4.5k
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Answer: Answer: Allelic Distance calculation using PED format data
updated 2.9 years ago by 45k • written 10.1 years ago by 11k
4
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1
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2.3k
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Comment: C: PLINK results interpretation
10.2 years ago by chrchang523 11k
1
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1
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2.2k
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Answer: Answer: PLINK gene report problem
updated 2.9 years ago by 45k • written 10.2 years ago by 11k
0
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1
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3.4k
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Comment: C: Are Plink MDS plots supposed to complete so quickly?
10.2 years ago by chrchang523 11k
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0
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5.2k
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Comment: Comment: Merging two Plink datasets, but some sites have reversed genotypes
updated 2.7 years ago by 45k • written 10.2 years ago by 11k
3
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1
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5.2k
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Answer: Answer: Merging two Plink datasets, but some sites have reversed genotypes
updated 2.7 years ago by 45k • written 10.2 years ago by 11k
1
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0
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4.0k
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Comment: Comment: PLINK gxe not reading covariate file
updated 2.7 years ago by 45k • written 10.2 years ago by 11k
1
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1
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4.0k
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Comment: Comment: PLINK gxe not reading covariate file
updated 2.7 years ago by 45k • written 10.3 years ago by 11k
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1
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4.0k
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Comment: C: PLINK gxe not reading covariate file
10.3 years ago by chrchang523 11k
0
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1
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4.0k
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Comment: C: PLINK gxe not reading covariate file
10.3 years ago by chrchang523 11k
0
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1
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11k
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Comment: Comment: Coding genotypes from nucleotides to 0/1/2 in R.
updated 2.7 years ago by 45k • written 10.3 years ago by 11k
3
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0
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4.6k
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Answer: Answer: GWAS result with pval equal zero. How to handle and how to plot?
updated 2.7 years ago by 45k • written 10.3 years ago by 11k
0
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1
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4.8k
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Comment: Comment: Plink: LD-clumping of .dosage/.fam files
updated 2.7 years ago by 45k • written 10.3 years ago by 11k
1
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1
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4.8k
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Answer: A: Plink: LD-clumping of .dosage/.fam files
10.3 years ago by chrchang523 11k
0
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1
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3.9k
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Answer: Answer: Obtaining all SNPs in LD with tag SNP above threshold (D-prime/LOD) from 1000 Ge
updated 2.7 years ago by 45k • written 10.3 years ago by 11k
1
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0
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3.3k
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Answer: Answer: plink mergelist put many individuals into same binary file set
updated 3.2 years ago by 45k • written 10.4 years ago by 11k
0
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1
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3.6k
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Answer: Answer: defining reference alleles in 23andMe file to create plink .ped file
updated 3.7 years ago by 45k • written 10.4 years ago by 11k
3
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1
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11k
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Answer: A: PLINK: Convert bed,bim, fam to vcf file
10.4 years ago by chrchang523 11k
0
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0
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3.5k
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Comment: Comment: Convert from oxford to plink format with no missing genotypes
updated 3.2 years ago by 45k • written 10.4 years ago by 11k
1
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1
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3.5k
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Answer: Answer: Convert from oxford to plink format with no missing genotypes
updated 3.2 years ago by 45k • written 10.4 years ago by 11k
914 results • Page 16 of 19
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