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3.4k
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Comment: Comment: .lgen to .ped conversion failing
updated 3.6 years ago by 45k • written 10.9 years ago by 11k
3
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1
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3.5k
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Answer: Answer: nan in .bim file generated by plink
updated 3.7 years ago by 45k • written 10.9 years ago by 11k
0
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1
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6.4k
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Comment: C: Haplotype frequencies from 1000 genomes
11.0 years ago by chrchang523 11k
3
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1
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8.5k
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Comment: Comment: PLINK returns NA values for all minor allele frequencies in my data
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
1
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0
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4.8k
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Answer: Answer: create plink files from 23andMe JSON files
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
1
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1
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12k
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Comment: Comment: PLINK format to EIGENSTRAT format
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
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0
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3.0k
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Comment: C: Filtering ASE variants with those in high LD using plink
11.0 years ago by chrchang523 11k
0
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1
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3.0k
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Answer: Answer: Filtering ASE variants with those in high LD using plink
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
0
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1
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4.0k
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Comment: Comment: extract SNPs from compressed PLINK files
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
1
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1
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5.3k
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Answer: Answer: formula to calculate LD in plink
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
1
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1
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5.3k
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Comment: Comment: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
3
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1
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5.3k
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Answer: Answer: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
0
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0
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4.7k
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Comment: Comment: How to update a 23andme, vcf or plink bed file to hg38?
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
0
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1
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7.4k
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Answer: Answer: Logistic regression with PLINK, p-values
updated 3.7 years ago by 45k • written 11.0 years ago by 11k
0
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0
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3.3k
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Answer: Answer: Plink input, phenotypes and multiple testing
updated 3.7 years ago by 45k • written 11.1 years ago by 11k
2
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0
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6.5k
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Answer: Answer: How To Use Plink To Compute The Ld Between Two Sets Of Snps?
updated 3.8 years ago by 45k • written 11.1 years ago by 11k
11
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0
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41k
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Answer: Answer: Create VCF file from .bim, .fam and .bed file
updated 3.8 years ago by 45k • written 11.1 years ago by 11k
2
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0
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8.3k
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Comment: Comment: plink 1.9 Principal Component Analysis
updated 3.8 years ago by 45k • written 11.1 years ago by 11k
0
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0
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2.5k
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Comment: Comment: Filter according to a list of snps, setting SNPs not found in data as missing
updated 3.8 years ago by 45k • written 11.1 years ago by 11k
4
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1
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2.5k
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Answer: A: Filter according to a list of snps, setting SNPs not found in data as missing
11.2 years ago by chrchang523 11k
0
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0
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4.4k
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Comment: Comment: multisample BED files to PED conversion
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
0
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1
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4.4k
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Comment: Comment: multisample BED files to PED conversion
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
3
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1
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8.3k
views
Answer: Answer: plink 1.9 Principal Component Analysis
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
0
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0
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6.0k
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Comment: Comment: Haploview problem over heap space
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
0
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1
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4.4k
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Comment: C: multisample BED files to PED conversion
11.2 years ago by chrchang523 11k
2
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1
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4.4k
views
Answer: Answer: multisample BED files to PED conversion
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
16
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1
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22k
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Answer: Answer: Plink: Retrieving specific SNP data for individuals in dataset
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
6
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0
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9.4k
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Answer: Answer: r2 correlation interpretation snp in plink pruning
updated 3.8 years ago by 45k • written 11.2 years ago by 11k
0
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0
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5.4k
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Answer: Answer: how to deal with snps with different name but same bp pos in plink map file?
updated 3.9 years ago by 45k • written 11.2 years ago by 11k
3
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0
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3.5k
views
Answer: A: Question about re-coding SNPs in PLINK
11.2 years ago by chrchang523 11k
3
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1
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11k
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Comment: C: Weir And Cockerham Fst from PLINK(bed/bim/fam) input files
11.2 years ago by chrchang523 11k
1
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0
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4.7k
views
Answer: Answer: Calculate r^2 from allele frequencies
updated 3.9 years ago by 45k • written 11.2 years ago by 11k
1
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2
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11k
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Comment: C: Weir And Cockerham Fst from PLINK(bed/bim/fam) input files
11.2 years ago by chrchang523 11k
5
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2
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11k
views
Answer: Answer: Weir And Cockerham Fst from PLINK(bed/bim/fam) input files
updated 3.9 years ago by 45k • written 11.2 years ago by 11k
1
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1
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2.9k
views
Answer: A: [Request] Case/Control VCF dataset
11.2 years ago by chrchang523 11k
1
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1
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25k
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Answer: A: Plink: Quick Way To Combine Two Datasets Using Only Common Markers
11.2 years ago by chrchang523 11k
3
votes
0
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8.7k
views
Answer: Answer: Error while running Admixture program with .bed files
updated 3.9 years ago by 45k • written 11.2 years ago by 11k
8
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1
reply
9.8k
views
Answer: Answer: Reorder samples in a PLINK dataset
updated 3.9 years ago by 45k • written 11.3 years ago by 11k
4
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1
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9.2k
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Answer: A: Some 'NA's in plink logistic regression results
11.3 years ago by chrchang523 11k
0
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0
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3.9k
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Comment: C: SNP Questions: Mendelian Error Rates and SNP Orientation relative to genome.
11.3 years ago by chrchang523 11k
0
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1
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5.1k
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Comment: C: Help needed parsing VCF files
11.3 years ago by chrchang523 11k
0
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1
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5.1k
views
Answer: A: Help needed parsing VCF files
11.3 years ago by chrchang523 11k
8
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1
reply
20k
views
Answer: Answer: How to I convert 23andMe Raw Genome to GenBank or FASTA?
updated 3.9 years ago by 45k • written 11.3 years ago by 11k
1
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1
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6.2k
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Comment: C: GWAS on dosage data - interaction
11.3 years ago by chrchang523 11k
0
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0
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4.2k
views
Answer: A: plink analysis including covariates and gxe
11.3 years ago by chrchang523 11k
0
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0
replies
25k
views
Answer: A: Accounting for problem SNPS when merging multiple plink files
11.3 years ago by chrchang523 11k
3
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1
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7.4k
views
Answer: A: How to interpret and extract from a Vcf file Genotype informations as values
11.3 years ago by chrchang523 11k
2
votes
1
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12k
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Answer: A: Conversion tools for GWAS
11.4 years ago by chrchang523 11k
3
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1
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8.1k
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Answer: A: List of np-hard problems in biology/bioinformatics
11.4 years ago by chrchang523 11k
0
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1
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2.7k
views
Answer: A: Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
11.5 years ago by chrchang523 11k
914 results • Page 18 of 19
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