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Answer: Answer: Merge files in Plink
4.1 years ago by chrchang523 11k
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10k
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Comment: Comment: Calculate population allele frequencies from a vcf file including multiple popul
4.1 years ago by chrchang523 11k
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2.6k
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Comment: Comment: formatting error: Calculate LD matrix from bgen file
4.1 years ago by chrchang523 11k
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0
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2.1k
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Answer: Answer: extract list of SNPs from multiple chr{1:22}.bgen files using plink2
4.1 years ago by chrchang523 11k
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2.6k
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Answer: Answer: formatting error: Calculate LD matrix from bgen file
4.1 years ago by chrchang523 11k
2
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1
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3.8k
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Comment: Comment: PLINK ASSOC : Skipping --assoc/--model since less than two phenotypes are prese
4.1 years ago by chrchang523 11k
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3.8k
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Answer: Answer: PLINK ASSOC : Skipping --assoc/--model since less than two phenotypes are prese
4.1 years ago by chrchang523 11k
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1.4k
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Comment: Comment: individual-level allele frequencies
4.1 years ago by chrchang523 11k
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1.4k
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Answer: Answer: How to obtain subpopulation specific allelic variants from a .vcf file using PLI
4.1 years ago by chrchang523 11k
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2.4k
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Answer: Answer: PLINK Error: Too many distinct nonstandard chromosome/contig names.
4.1 years ago by chrchang523 11k
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0
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2.8k
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Comment: Comment: How to perform logistic regression (with option “firth-fallback”) in Plink2
4.2 years ago by chrchang523 11k
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1
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2.8k
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Comment: Comment: How to perform logistic regression (with option “firth-fallback”) in Plink2
4.2 years ago by chrchang523 11k
2
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0
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1.5k
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Answer: Answer: How do you update plink bim file to remove 'chr' string?
4.2 years ago by chrchang523 11k
1
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1
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1.8k
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Comment: Comment: PCA for combined set
4.2 years ago by chrchang523 11k
2
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1
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1.8k
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Answer: Answer: PCA for combined set
4.2 years ago by chrchang523 11k
2
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0
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980
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Answer: Answer: What is the logical operator for plink2 --extract-if-info?
4.2 years ago by chrchang523 11k
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1
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1.7k
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Comment: Comment: separate multi-alleles from bi-alleles
4.2 years ago by chrchang523 11k
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0
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1.1k
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Answer: Answer: How could I calculate r2 values between a list of SNPs with PLINK?
4.2 years ago by chrchang523 11k
2
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1
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5.5k
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Answer: Answer: Merge bgen,bgen.bgi,and .sample file from uk biobank
4.2 years ago by chrchang523 11k
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0
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2.0k
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Answer: Answer: Plink: --keep flag
4.2 years ago by chrchang523 11k
1
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1
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5.2k
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Comment: Comment: Plink 1.9 "File read failure" error when merging with --bmerge
4.2 years ago by chrchang523 11k
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1
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5.2k
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Comment: Comment: Plink 1.9 "File read failure" error when merging with --bmerge
4.2 years ago by chrchang523 11k
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2
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1.2k
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Answer: Answer: Converting plink to GenEpi files
4.3 years ago by chrchang523 11k
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0
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3.6k
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Comment: Comment: plink2 reorder alleles by fasta reference
4.3 years ago by chrchang523 11k
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1
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3.6k
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Comment: Comment: plink2 reorder alleles by fasta reference
4.3 years ago by chrchang523 11k
1
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1
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3.6k
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Answer: Answer: plink2 reorder alleles by fasta reference
4.3 years ago by chrchang523 11k
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0
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984
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Comment: Comment: genome build for --extract bed1 file in PLINK
4.3 years ago by chrchang523 11k
2
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0
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1.7k
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Answer: Answer: Preparing data for kinship calculations
updated 4.3 years ago by 45k • written 4.3 years ago by 11k
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3.6k
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Comment: Comment: Convert .gprobs files to PLINK format
4.3 years ago by chrchang523 11k
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1
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2.0k
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Comment: Comment: Problem to convert genotypes to plink format from bcftools
4.3 years ago by chrchang523 11k
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1
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2.3k
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Answer: Answer: GWAS QC step - Heterozygosity
4.3 years ago by chrchang523 11k
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0
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1.8k
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Comment: Comment: PLINK: ERROR: No nonmissing markers for individuals when using --cluster
4.3 years ago by chrchang523 11k
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0
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1.3k
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Answer: Answer: computing multiple PRS on the fly with plink
4.3 years ago by chrchang523 11k
0
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1
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1.8k
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Comment: Comment: PLINK: ERROR: No nonmissing markers for individuals when using --cluster
4.3 years ago by chrchang523 11k
1
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0
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2.6k
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Comment: Comment: LD matrix in PLINK
4.3 years ago by chrchang523 11k
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0
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2.5k
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Answer: Answer: Possible to remove .nosex IDs in Plink1.9
4.4 years ago by chrchang523 11k
3
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1
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2.3k
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Answer: Answer: Problem connecting web in PLINK
4.4 years ago by chrchang523 11k
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2
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6.8k
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Comment: Comment: Plink update name flag, setting column names
4.4 years ago by chrchang523 11k
0
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1
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6.8k
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Comment: Comment: Plink update name flag, setting column names
4.4 years ago by chrchang523 11k
2
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1
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6.8k
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Answer: Answer: Plink update name flag, setting column names
4.4 years ago by chrchang523 11k
2
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1
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1.3k
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Answer: Answer: Plink/VCFTools pairwise LD is always 1
4.4 years ago by chrchang523 11k
1
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0
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1.2k
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Comment: Comment: Remove duplicate SNPs by allele frequency in PLINK
4.4 years ago by chrchang523 11k
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0
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708
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Answer: Answer: Does PLINK only deal with SNP?
4.4 years ago by chrchang523 11k
1
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1
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2.8k
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Answer: Answer: SNP coordinates to rsID in .bim file
4.4 years ago by chrchang523 11k
2
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0
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2.5k
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Comment: Comment: Genotype Data in PLINK
4.4 years ago by chrchang523 11k
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0
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8.0k
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Comment: Comment: How to convert multiple vcf files to a ped file?
4.4 years ago by chrchang523 11k
0
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0
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5.7k
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Comment: Comment: When converting .ped, .bim and .fam files to .pgen, .psam and .pvar in PLINK2
4.4 years ago by chrchang523 11k
0
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1
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5.7k
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Comment: Comment: When converting .ped, .bim and .fam files to .pgen, .psam and .pvar in PLINK2
4.4 years ago by chrchang523 11k
0
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1
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5.7k
views
Comment: Comment: When converting .ped, .bim and .fam files to .pgen, .psam and .pvar in PLINK2
4.4 years ago by chrchang523 11k
0
votes
1
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5.7k
views
Comment: Comment: When converting .ped, .bim and .fam files to .pgen, .psam and .pvar in PLINK2
4.4 years ago by chrchang523 11k
914 results • Page 5 of 19
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