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Answer: Answer: Converting plink to GenEpi files
2.9 years ago by chrchang523 10k
0
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1
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2.2k
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Answer: Answer: plink2 reorder alleles by fasta reference
3.0 years ago by chrchang523 10k
2
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0
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1.2k
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Answer: Answer: Preparing data for kinship calculations
updated 3.0 years ago by 43k • written 3.0 years ago by 10k
0
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1
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1.5k
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Answer: Answer: GWAS QC step - Heterozygosity
3.0 years ago by chrchang523 10k
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0
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863
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Answer: Answer: computing multiple PRS on the fly with plink
3.0 years ago by chrchang523 10k
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0
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2.0k
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Answer: Answer: Possible to remove .nosex IDs in Plink1.9
3.0 years ago by chrchang523 10k
3
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1
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1.6k
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Answer: Answer: Problem connecting web in PLINK
3.0 years ago by chrchang523 10k
2
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1
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4.8k
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Answer: Answer: Plink update name flag, setting column names
3.0 years ago by chrchang523 10k
2
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1
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935
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Answer: Answer: Plink/VCFTools pairwise LD is always 1
3.1 years ago by chrchang523 10k
0
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0
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525
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Answer: Answer: Does PLINK only deal with SNP?
3.1 years ago by chrchang523 10k
1
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1
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1.9k
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Answer: Answer: SNP coordinates to rsID in .bim file
3.1 years ago by chrchang523 10k
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1
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3.9k
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Answer: Answer: When converting .ped, .bim and .fam files to .pgen, .psam and .pvar in PLINK2
3.1 years ago by chrchang523 10k
2
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2
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2.4k
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Answer: Answer: Efficient way to merge multiple single sample vcf files with same variants / loa
3.1 years ago by chrchang523 10k
1
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1
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1.0k
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Answer: Answer: Can we add additional columns to ped and map files in PLINK?
3.1 years ago by chrchang523 10k
1
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1
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6.0k
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Answer: Answer: Update FAM file Plink for fid and pheno
3.2 years ago by chrchang523 10k
2
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1
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3.0k
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Answer: Answer: How to calculate frequencies of SNPs with respect to a particular allele by plin
3.2 years ago by chrchang523 10k
1
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1
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941
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Answer: A: How to generate haplotypes with SNPs from WGS ?
3.2 years ago by chrchang523 10k
2
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0
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1.5k
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Answer: A: Unused command line option: --make-just-fam
3.2 years ago by chrchang523 10k
3
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1
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2.0k
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Answer: A: Minor allele count report with --freq count in PLINK2
3.2 years ago by chrchang523 10k
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0
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1.5k
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Answer: A: Adding SNP ID to original VCF file
3.3 years ago by chrchang523 10k
3
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1
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2.0k
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Answer: A: Plink error with reading phenotype file
3.3 years ago by chrchang523 10k
0
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0
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815
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Answer: A: What exactly is the 'p' in PLINK --thin?
3.3 years ago by chrchang523 10k
2
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1
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1.1k
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Answer: A: Comparison of allele frequencies between population
3.4 years ago by chrchang523 10k
1
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2
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1.1k
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Answer: A: Does anyone know what test or model is being used to calculate the regression co
3.4 years ago by chrchang523 10k
0
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1
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2.3k
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Answer: A: Correct command line syntax for plink2
3.4 years ago by chrchang523 10k
1
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0
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1.4k
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Answer: A: Prevent SNPs being filtered out due to MAF in PLINK
3.4 years ago by chrchang523 10k
1
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0
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1.1k
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Answer: A: Merging multiple .ped/.map files for PLINK analisys purposes
3.5 years ago by chrchang523 10k
2
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0
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1.2k
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Answer: A: Plink: Losing FAM file data when merging multiple BED files
3.6 years ago by chrchang523 10k
0
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0
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933
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Answer: A: Whats the format for PLINK .set file for epistasis analysis?
3.6 years ago by chrchang523 10k
0
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0
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3.6k
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Answer: A: Unrecognized flag in Plink2
3.7 years ago by chrchang523 10k
1
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0
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2.3k
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Answer: A: Plink2 Linear Regression for Binary phenotypes
3.7 years ago by chrchang523 10k
3
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0
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1.6k
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Answer: A: Plink altering VCF IDs
3.7 years ago by chrchang523 10k
2
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0
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865
views
Answer: A: How to check if a word is present in a column of a .ped file
3.7 years ago by chrchang523 10k
0
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0
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2.0k
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Answer: A: Use PLINK2 to extract the specific variants
3.8 years ago by chrchang523 10k
1
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1
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4.2k
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Answer: A: Correct way to convert plink files to vcf assigning the correct reference allele
3.8 years ago by chrchang523 10k
6
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0
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6.6k
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Answer: A: How to change IDs in plink files?
3.8 years ago by chrchang523 10k
1
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2
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1.6k
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Answer: A: Can Plink 1.07 set-hh-missing output VCF?
3.9 years ago by chrchang523 10k
2
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1
reply
3.7k
views
Answer: A: Possible to add `chr` prefix to each chromosome in PLINK?
3.9 years ago by chrchang523 10k
1
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1
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1.0k
views
Answer: A: How to calculate covariance between betas for GxE interaction using PLINK 2.0
3.9 years ago by chrchang523 10k
4
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1
reply
3.1k
views
Answer: A: Q: Error converting vcf to hap
3.9 years ago by chrchang523 10k
2
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1
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2.4k
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Answer: A: Dealing with Multiallelic in GWAS
3.9 years ago by chrchang523 10k
1
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0
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2.3k
views
Answer: A: From VCF, create only .tfam file
3.9 years ago by chrchang523 10k
0
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0
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729
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Answer: A: Export to PLINK file
4.0 years ago by chrchang523 10k
3
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1
reply
4.4k
views
Answer: A: Flipping every REF/ALT and corresponsing genotypes of every single indel in a VC
4.0 years ago by chrchang523 10k
1
vote
1
reply
4.3k
views
Answer: A: PLINK is not working (bad CPU type in executable) on Mac
4.0 years ago by chrchang523 10k
2
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1
reply
1.5k
views
Answer: A: Plink 1.9 haplotype blocks with not phased data
4.0 years ago by chrchang523 10k
2
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1
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945
views
Answer: A: GWAS on CNV - looking for method
4.0 years ago by chrchang523 10k
0
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1
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3.5k
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Answer: A: 1000 genome download
4.1 years ago by chrchang523 10k
2
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1
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3.0k
views
Answer: C: PLINK 1.9 make-bed only produces '-temporary' files with no explanatory error me
4.1 years ago by chrchang523 10k
1
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0
replies
2.5k
views
Answer: A: Calculating genetic distance from VCF to MAP format
4.1 years ago by chrchang523 10k
442 results • Page 3 of 9
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