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Answer: Answer: quality control scRNAseq
6 weeks ago by jv ★ 1.8k
2
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0
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303
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Answer: Answer: Single cell rna sequencing analysis using R help
7 weeks ago by jv ★ 1.8k
0
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0
replies
678
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Answer: Answer: Filter out doublet and Clustering
7 weeks ago by jv ★ 1.8k
1
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0
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449
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Answer: Answer: Significance of P value in GSEA
10 weeks ago by jv ★ 1.8k
0
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0
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473
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Answer: Answer: How to get raw mRNA count from Seurat converted anndata
10 weeks ago by jv ★ 1.8k
1
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0
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389
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Answer: Answer: Need a spatial transcriptomics cancer data
11 weeks ago by jv ★ 1.8k
0
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0
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326
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Answer: Answer: GTEx TPMs Vs normalized data
11 weeks ago by jv ★ 1.8k
2
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1
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536
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Answer: Answer: GO and KEGG
11 weeks ago by jv ★ 1.8k
0
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0
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199
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Answer: Answer: GEO database
12 weeks ago by jv ★ 1.8k
2
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0
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385
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
12 weeks ago by jv ★ 1.8k
0
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1
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1.0k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by jv ★ 1.8k
0
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0
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486
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Answer: Answer: Enrichement with clusterProfiler and biomartr
3 months ago by jv ★ 1.8k
1
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2
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740
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Answer: Answer: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by jv ★ 1.8k
0
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0
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918
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Answer: Answer: Install STAR on MacBook Pro M1
3 months ago by jv ★ 1.8k
0
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1
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1.4k
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Answer: Answer: Error in schicexplorer's hicbuildmatrix
4 months ago by jv ★ 1.8k
1
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1
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762
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Answer: Answer: Getting gene counts from transcript counts using R package 'tximport'
4 months ago by jv ★ 1.8k
0
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0
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496
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Answer: Answer: R ComplexHeatmap - Adujusting the cell size in heatmap
4 months ago by jv ★ 1.8k
0
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0
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293
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Answer: Answer: Need Help Mapping Probe IDs to Gene Symbols
4 months ago by jv ★ 1.8k
0
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0
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555
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Answer: Answer: RNA seq
4 months ago by jv ★ 1.8k
0
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0
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840
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Answer: Answer: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
updated 4 months ago by 43k • written 4 months ago by ★ 1.8k
2
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1
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686
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Answer: Answer: Is there a need to batch correct FPKM or TPM values for within sample comparison
4 months ago by jv ★ 1.8k
0
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0
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321
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Answer: Answer: DESeq2 with unbalanced dataset and multifactor design
5 months ago by jv ★ 1.8k
1
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0
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533
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Answer: Answer: Database of Mapped Data for Single Cell Sequencing
5 months ago by jv ★ 1.8k
1
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0
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452
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Answer: Answer: Analysis and results microarray data for research
6 months ago by jv ★ 1.8k
1
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0
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710
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Answer: Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
10 months ago by jv ★ 1.8k
1
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1
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2.3k
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Answer: Answer: active.ident slot present but not recognized in seurat object
11 months ago by jv ★ 1.8k
0
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0
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649
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Answer: Answer: GSEA with duplicate sample
11 months ago by jv ★ 1.8k
0
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0
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416
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Answer: Answer: Please help with edgeR script
12 months ago by jv ★ 1.8k
2
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1
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1.5k
views
Answer: Answer: annotation_names_side does not work in complexheatmap package
12 months ago by jv ★ 1.8k
0
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1
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953
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Answer: Answer: PSEUDOBULK HELP-DE Expression in scRNA-seq
12 months ago by jv ★ 1.8k
0
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0
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1.3k
views
Answer: Answer: Issue in installing any package in R
12 months ago by jv ★ 1.8k
0
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1
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20k
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Answer: Answer: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
1
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1
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2.6k
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Answer: Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
13 months ago by jv ★ 1.8k
1
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1
reply
1.8k
views
Answer: Answer: Running AUCell on integrated scRNAseq data
13 months ago by jv ★ 1.8k
2
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1
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2.3k
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Answer: Answer: How exactly can I define promoter region from GENCODE annotation GTF file?
13 months ago by jv ★ 1.8k
3
votes
1
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1.2k
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Answer: Answer: How to annotate a MACS2 peak output file that is in tabular format?
13 months ago by jv ★ 1.8k
0
votes
1
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490
views
Answer: Answer: Bam to bedgraph
14 months ago by jv ★ 1.8k
1
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1
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1.0k
views
Answer: Answer: Merge common elements in R
14 months ago by jv ★ 1.8k
2
votes
1
reply
781
views
Answer: Answer: Is there a package that can do downstream analysis of single-cell V(D)J sequenci
14 months ago by jv ★ 1.8k
3
votes
0
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1.5k
views
Answer: Answer: How does enrichGO function calculated p-value?
14 months ago by jv ★ 1.8k
0
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0
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1.0k
views
Answer: Answer: Assigning multiple identities to seurat metadata
updated 14 months ago by 43k • written 14 months ago by ★ 1.8k
0
votes
2
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836
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Answer: Answer: expression of the GAT1 transport protein
14 months ago by jv ★ 1.8k
2
votes
1
reply
726
views
Answer: Answer: want the codes for cuffdiff , NIOSeq , bayseq to perform DEGs.
14 months ago by jv ★ 1.8k
2
votes
0
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793
views
Answer: Answer: How to merge unique/non overlapping genes between 2 gene model GFF3 files?
14 months ago by jv ★ 1.8k
0
votes
1
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1000
views
Answer: Answer: Trimmomatic
14 months ago by jv ★ 1.8k
1
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1
reply
1.0k
views
Answer: Answer: Single sample GSEA analysis
15 months ago by jv ★ 1.8k
2
votes
1
reply
562
views
Answer: Answer: How do I remove certain reads from my raw sequencing data using BLAST?
15 months ago by jv ★ 1.8k
1
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1
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2.1k
views
Answer: Answer: GSEA on nonmodel organisms
15 months ago by jv ★ 1.8k
3
votes
0
replies
1.2k
views
Answer: Answer: Gene Set Enrichment Analysis, pathway, metabolism
15 months ago by jv ★ 1.8k
1
vote
0
replies
612
views
Answer: Answer: deconvolution of spatial transcriptome
15 months ago by jv ★ 1.8k
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